PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g019530m
Common NameCISIN_1g019530mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HD-ZIP
Protein Properties Length: 340aa    MW: 37331.8 Da    PI: 8.4965
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g019530mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.11.3e-17167221256
                        T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        rk+ +++keq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  orange1.1g019530m 167 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 221
                        778899***********************************************98 PP
2HD-ZIP_I/II127.94.2e-41167257192
        HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                        +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk
  orange1.1g019530m 167 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELR-ALK 257
                        69*************************************************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046181.5E-643127IPR006712HD-ZIP protein, N-terminal
SuperFamilySSF466892.18E-18157224IPR009057Homeodomain-like
PROSITE profilePS5007116.86163223IPR001356Homeobox domain
SMARTSM003895.4E-15165227IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.9E-17167221IPR009057Homeodomain-like
PfamPF000464.3E-15167221IPR001356Homeobox domain
CDDcd000862.58E-15167224No hitNo description
PROSITE patternPS000270198221IPR017970Homeobox, conserved site
SMARTSM003404.5E-26223266IPR003106Leucine zipper, homeobox-associated
PfamPF021836.9E-11223257IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MELALSLGDT SKPFSSKLSS KDLGFCMGLN GSSFNGKSEE KSASDHHPSP IQLDLLPFSP  60
VPRAHHHQPS SQLRFPWLNV VSTEPGPMDG AGGGGLDVNR FPVAMAQEEA DDGTTALSSP  120
NSTVSSFQMD HFCIRNGRSK RDLFDVEISH DRASSRASDD EENGLTRKKL RLSKEQSAFL  180
EESFKEHNTL NPKQKLALAK QLNLRPRQVE VWFQNRRART KLKQTEVDCE YLKRCCETLT  240
EENRRLQKEL QELRALKTSQ PFYMQLPATT LTMCPSCERV ATATTSSATA TTAAAATTAA  300
KGNNSNNKDS SVTLQLANKP ARLFPFSQLP QAQGAQSTS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165171TRKKLRL
2215223RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM2629443e-80AM262944.1 Phillyrea latifolia partial mRNA for type II homeodomain-leucine zipper protein precursor (ophh-61B gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006492845.10.0homeobox-leucine zipper protein HOX11
SwissprotP466653e-90HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A067G6520.0A0A067G652_CITSI; Uncharacterized protein
STRINGXP_006492845.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49282852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-68homeobox from Arabidopsis thaliana