PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g020567m
Common NameCISIN_1g020567mg, LOC102626497
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family BES1
Protein Properties Length: 325aa    MW: 34611.5 Da    PI: 8.2833
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g020567mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822215.99.6e-6731442150
             DUF822   2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspess 93 
                        ++ r ptwkErEnnkrRERrRRaiaaki+aGLR++Gnyklpk++DnneVlkALc+eAGw+ve+DGttyrkg+kp e+++++g sa asp+ss
  orange1.1g020567m   3 SGARLPTWKERENNKRRERRRRAIAAKIFAGLRMYGNYKLPKHCDNNEVLKALCNEAGWTVEPDGTTYRKGCKPVERMDIVGGSAVASPCSS 94 
                        789***************************************************************************************** PP

             DUF822  94 lqsslkssalaspvesysaspksssfpspssldsislasa.asllpvlsvlslvsssl 150
                        ++        +sp++sy++sp+sssfpsp+s++ + + +a +sl+p+l++ls++sss+
  orange1.1g020567m  95 YH--------PSPCASYNPSPASSSFPSPASSSYAANPNAdNSLIPWLKNLSSASSSA 144
                        **........*******************99888877666699********9987765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056871.2E-654138IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MTSGARLPTW KERENNKRRE RRRRAIAAKI FAGLRMYGNY KLPKHCDNNE VLKALCNEAG  60
WTVEPDGTTY RKGCKPVERM DIVGGSAVAS PCSSYHPSPC ASYNPSPASS SFPSPASSSY  120
AANPNADNSL IPWLKNLSSA SSSASSSKLP HLYIHTGSIS APVTPPLSSP TARTPRMKSD  180
WEDQSSRPGL GGQHYSFLPS STPPSPGRQI VPDPEWFAGI RLPHGAPTSP TFSLVASNPF  240
GFKDETLAGG GSRMWTPGQS GTCSPAIAAG SDHTADVPMS EVVTDEFAFG SNATGLVKAW  300
EGERIHEECG SDDLELTLGS SRTR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A6e-23677372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B6e-23677372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C6e-23677372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D6e-23677372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00248DAPTransfer from AT1G78700Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006477843.10.0BES1/BZR1 homolog protein 4 isoform X1
RefseqXP_006477844.10.0BES1/BZR1 homolog protein 4 isoform X2
SwissprotQ9ZV881e-143BEH4_ARATH; BES1/BZR1 homolog protein 4
TrEMBLA0A067DLE10.0A0A067DLE1_CITSI; Uncharacterized protein
STRINGXP_006477843.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19172781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78700.11e-123BES1/BZR1 homolog 4