PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g020958m
Common NameCISIN_1g020391mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 320aa    MW: 35568.6 Da    PI: 4.5865
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g020958mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.91.4e-195099255
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       +y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++a +++++g
  orange1.1g020958m 50 QYRGIRQRP-WGKWAAEIRDPTK---GVRVWLGTFNTAEEAARAYDAEARRIRG 99
                       69*******.**********964...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.94750107IPR001471AP2/ERF domain
SMARTSM003802.0E-3750113IPR001471AP2/ERF domain
CDDcd000183.87E-3450108No hitNo description
SuperFamilySSF541711.83E-2250109IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-3250109IPR001471AP2/ERF domain
PfamPF008478.3E-125199IPR001471AP2/ERF domain
PRINTSPR003678.5E-125162IPR001471AP2/ERF domain
PRINTSPR003678.5E-127389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070483Biological Processdetection of hypoxia
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MKFASLYDLV VLLVYEITFF FLFSPIIEGS TAVKHVEQAK KSTERKRKNQ YRGIRQRPWG  60
KWAAEIRDPT KGVRVWLGTF NTAEEAARAY DAEARRIRGK KAKVNFPDET PAAAPKSSVK  120
ANSQKSVPKA CLSPVQPSLN QNFNYLNNSD QDYYNNVSIL EEKPQVNQYG YMGSFPDDGE  180
LGFKPFVPTA DDTPVYFNSD QGSNSFDCSD FGWGEQAPKT PEISSVLEAT PEVDESQFVD  240
AVANPMKKLK SNSENAVPVQ DNNGKSLSDE LLFLPMPYPE GSWEASLDAF LNGDNTQDGG  300
NLMNLWSFDD FPSTLGGVY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2250107260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.46860.0callus| flower| fruit| root| seed| stem| vegetative meristem
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00204DAPTransfer from AT1G53910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006426780.10.0ethylene-responsive transcription factor RAP2-12 isoform X1
RefseqXP_024036019.10.0ethylene-responsive transcription factor RAP2-12 isoform X1
SwissprotQ6K7E64e-65ERF1_ORYSJ; Ethylene-responsive transcription factor 1
TrEMBLA0A067E4E30.0A0A067E4E3_CITSI; Uncharacterized protein
STRINGXP_006426779.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.29e-62related to AP2 12
Publications ? help Back to Top
  1. Kim CY, et al.
    Identification of rice blast fungal elicitor-responsive genes by differential display analysis.
    Mol. Plant Microbe Interact., 2000. 13(4): p. 470-4
    [PMID:10755311]
  2. Koo SC, et al.
    OsBWMK1 mediates SA-dependent defense responses by activating the transcription factor OsWRKY33.
    Biochem. Biophys. Res. Commun., 2009. 387(2): p. 365-70
    [PMID:19607808]
  3. Iwamoto M,Takano M
    Phytochrome-regulated EBL1 contributes to ACO1 upregulation in rice.
    Biotechnol. Lett., 2011. 33(1): p. 173-8
    [PMID:20872166]
  4. Serra TS, et al.
    OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors.
    Plant Mol. Biol., 2013. 82(4-5): p. 439-55
    [PMID:23703395]
  5. Jisha V, et al.
    Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.
    PLoS ONE, 2015. 10(6): p. e0127831
    [PMID:26035591]
  6. Lourenço TF, et al.
    The Rice E3-Ubiquitin Ligase HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1 Modulates the Expression of ROOT MEANDER CURLING, a Gene Involved in Root Mechanosensing, through the Interaction with Two ETHYLENE-RESPONSE FACTOR Transcription Factors.
    Plant Physiol., 2015. 169(3): p. 2275-87
    [PMID:26381316]