PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g020994m

Common Name

CISIN_1g013033mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C3H

Protein Properties

Length: 320aa MW: 34235.3 Da PI: 7.9335

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g020994m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.9	1.5e-12	6	29	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C++++rtG Ck+G CkF+H++ orange1.1g020994m 6 KSCPYYMRTGSCKFGVACKFHHPQ 29 66********************97 PP
2	zf-CCCH	42.4	1.2e-13	153	178	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ Cr+++ tGtCkyG+ CkF+H++ orange1.1g020994m 153 DQPDCRYYMNTGTCKYGADCKFHHPK 178 6899********************96 PP
3	zf-CCCH	35.1	2.2e-11	198	223	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C++++ +G+Ck+G++C+F H+ orange1.1g020994m 198 PGQAICSNYSMYGICKFGPTCRFDHP 223 5789*********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	14.352	2	30	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.7E-5	4	29	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.06E-6	4	30	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.7E-10	5	29	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.3E-5	7	28	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.3E-6	151	178	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.455	151	179	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	7.8E-11	153	178	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.89E-7	155	180	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.0E-6	157	178	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.5E-6	197	224	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.911	197	225	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.45E-6	197	223	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.2E-8	199	223	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	7.2E-4	202	222	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MRQDEKSCPY YMRTGSCKFG VACKFHHPQP SSLGTALPLT GNASLGSMGS SVLPSSGLQY 60 AGSLPTWSLQ RAPYLSSRLQ GTQSYMPLIV SPSQGIVPAP GWNTYMGNIG PLSPTSIAGS 120 NLIYSSRNQG DLGAGAQMHI LSASSQNLPE RPDQPDCRYY MNTGTCKYGA DCKFHHPKER 180 IAQSAASNIG PLGLPSRPGQ AICSNYSMYG ICKFGPTCRF DHPYAGYPIN YGLSLPPLSI 240 LDSSLMNHQA ISATHSIETS PDASSKIPNW VQNSDAVSVQ HQNPDMKNST TKNSDDSSKV 300 DHPPHSVPNC SEPPHDQSN*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Csi.6520	0.0	callus

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006447662.1	0.0	zinc finger CCCH domain-containing protein 3
Refseq	XP_006469597.1	0.0	zinc finger CCCH domain-containing protein 3
TrEMBL	A0A067EWN2	0.0	A0A067EWN2_CITSI; Uncharacterized protein
STRING	XP_006469597.1	0.0	(Citrus sinensis)
STRING	XP_006447662.1	0.0	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04990.2	3e-64	C3H family protein

Link Out ? help Back to Top
Phytozome	orange1.1g020994m