PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g021347m
Common NameCISIN_1g017930mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family WRKY
Protein Properties Length: 314aa    MW: 34619.8 Da    PI: 9.9676
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g021347mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY30.95.3e-10292311322
                        -SS-EEEEEEE--TT-SS-E CS
               WRKY   3 DgynWrKYGqKevkgsefpr 22 
                        D ++WrKYGqK++kgs++pr
  orange1.1g021347m 292 DDFSWRKYGQKPIKGSPHPR 311
                        99*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.5E-15240288IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.3E-9279311IPR003657WRKY domain
PROSITE profilePS5081111.795285313IPR003657WRKY domain
SuperFamilySSF1182901.23E-7288312IPR003657WRKY domain
PfamPF031063.0E-6292312IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MAVELMMEYG NTSHFTDKVE DCAVQEAASG LESVEKLINL LSQQQQVQQN NSHQSSPSSR  60
SSMDLENDCK AVADVAVSKF KRVISLLGRN RIGHARFRRA PVAAPCVDYQ QNQEKDKNLQ  120
QRQQQEVEVV PETKVYYARP IQQIPPLPPP PRNYHQHEFS TLVVPKNGVD LERKDSATTI  180
NFSNYTSAGN SFLSSLTVTG DNDNKQQPSS SSASATFHFT NLSQQVSSAG KPPLSSSSLK  240
RKCSSASDNL ASAKSCGVSS GRCHCTKKRK SRVKRVVRVP AVSLRLSDIP PDDFSWRKYG  300
QKPIKGSPHP RYA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.30591e-155flower| vegetative meristem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006425967.10.0probable WRKY transcription factor 15
TrEMBLA0A067GUH60.0A0A067GUH6_CITSI; Uncharacterized protein
STRINGXP_006425967.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23320.21e-36WRKY DNA-binding protein 15