PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g021533m
Common NameCISIN_1g021533mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family DBB
Protein Properties Length: 312aa    MW: 33724.7 Da    PI: 6.6262
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g021533mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.81.9e-07445539
           zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39
                        C+ +++ e++ fC+ ++  lC++C    H+        H++
  orange1.1g021533m  4 QCDVCNKSEASVFCTADEAALCDTCDHRVHHAnklaskhHRF 45
                       7******99********************6445888886666 PP
2zf-B_box23.21.4e-075692438
           zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38
                       ++C+ ++e ++ lfC++++  lC+dC   +H    Ht
  orange1.1g021533m 56 PICDVCQERRAFLFCQQDRAILCRDCDIPIHTAneHT 92
                       68****************************9546665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.836147IPR000315B-box-type zinc finger
CDDcd000213.85E-6347No hitNo description
PfamPF006432.5E-5444IPR000315B-box-type zinc finger
SMARTSM003362.2E-6447IPR000315B-box-type zinc finger
PROSITE profilePS501199.86953100IPR000315B-box-type zinc finger
SMARTSM003361.1E-1353100IPR000315B-box-type zinc finger
CDDcd000214.15E-1056100No hitNo description
PfamPF006431.5E-55692IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009641Biological Processshade avoidance
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MKIQCDVCNK SEASVFCTAD EAALCDTCDH RVHHANKLAS KHHRFSLLHP SSKHFPICDV  60
CQERRAFLFC QQDRAILCRD CDIPIHTANE HTQKHNRFLL TGVKLSATST LYTSSVSKSN  120
PNGCDSSVPV PDANKSIKKT VVSVAPVNSN PPSNSEISTS SAVTNSNGGN SVIAANECGT  180
VSASSISEYL EMLPGWHVED LLDSSSDPLG FCKGNDGTLP FLDADLDCNL SSFSSERVGI  240
WVPQAASPVQ TCLYSSQSQT AGHISFKDAK EVTGVKAVSS NRRYTEDVFT VPQISPQLAG  300
FKRSRPNIWE D*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006435097.10.0B-box zinc finger protein 21
SwissprotQ9LQZ72e-82BBX21_ARATH; B-box zinc finger protein 21
TrEMBLA0A067GYU40.0A0A067GYU4_CITSI; Uncharacterized protein
STRINGXP_006435097.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54002748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.17e-81salt tolerance homolog2
Publications ? help Back to Top
  1. Xu D, et al.
    BBX21, an Arabidopsis B-box protein, directly activates HY5 and is targeted by COP1 for 26S proteasome-mediated degradation.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(27): p. 7655-60
    [PMID:27325768]
  2. Xu DB, et al.
    The G-Protein Ī² Subunit AGB1 Promotes Hypocotyl Elongation through Inhibiting Transcription Activation Function of BBX21 inĀ Arabidopsis.
    Mol Plant, 2017. 10(9): p. 1206-1223
    [PMID:28827171]
  3. Xu D,Jiang Y,Li J,Holm M,Deng XW
    The B-Box Domain Protein BBX21 Promotes Photomorphogenesis.
    Plant Physiol., 2018. 176(3): p. 2365-2375
    [PMID:29259103]
  4. Job N,Yadukrishnan P,Bursch K,Datta S,Johansson H
    Two B-Box Proteins Regulate Photomorphogenesis by Oppositely Modulating HY5 through their Diverse C-Terminal Domains.
    Plant Physiol., 2018. 176(4): p. 2963-2976
    [PMID:29439209]
  5. Crocco CD,Ocampo GG,Ploschuk EL,Mantese A,Botto JF
    Heterologous Expression of AtBBX21 Enhances the Rate of Photosynthesis and Alleviates Photoinhibition in Solanumtuberosum.
    Plant Physiol., 2018. 177(1): p. 369-380
    [PMID:29555784]
  6. Kang X, et al.
    HRB2 and BBX21 interaction modulates Arabidopsis ABI5 locus and stomatal aperture.
    Plant Cell Environ., 2018. 41(8): p. 1912-1925
    [PMID:29748960]