PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g021598m
Common NameCISIN_1g021598mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family WRKY
Protein Properties Length: 311aa    MW: 35164.8 Da    PI: 6.4338
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g021598mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY81.11.2e-25136196259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                        +Dg++WrKYGqKe+ ++++prsY+rCt++   gC+++k+v+r ++dp++ ++tY g+H+++
  orange1.1g021598m 136 NDGHAWRKYGQKEILNTKHPRSYFRCTHKyvqGCRATKQVQRRDDDPQMYDTTYIGHHTCR 196
                        8***************************9999**************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.1E-26122196IPR003657WRKY domain
PROSITE profilePS5081120.231130193IPR003657WRKY domain
SuperFamilySSF1182901.31E-24131196IPR003657WRKY domain
SMARTSM007747.6E-38135197IPR003657WRKY domain
PfamPF031061.1E-25136196IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MGTLCSEKTS REKMAKELVK GKKFAHQLQF LLQKPFEEDG LVSAEDLVVK ILRSFTQTLS  60
VLGTTVTTSS CDDDHEKYQQ QQANSCNVNS DDYRRRSEDS GESKKRPAAK DSVSKRGCYK  120
RKKNSQTWTV VSSTSNDGHA WRKYGQKEIL NTKHPRSYFR CTHKYVQGCR ATKQVQRRDD  180
DPQMYDTTYI GHHTCRDIIS FPQIVAESSE PNWGSTISTG GSFVVSSSSS IPTEEIKQEC  240
KEETTSTDHQ DLSSLDSIVW EDFVSFQSSD EPEAAAMVFS CNNNKMISSH SLDMYNDFEH  300
GFHFDDSGIF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-26129196269OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103122KKRPAAKDSVSKRGCYKRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.74250.0callus| fruit| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00408DAPTransfer from AT3G56400Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006435943.10.0probable WRKY transcription factor 70
RefseqXP_006486150.10.0probable WRKY transcription factor 70
TrEMBLA0A067FWF70.0A0A067FWF7_CITSI; Uncharacterized protein
STRINGXP_006486150.10.0(Citrus sinensis)
STRINGXP_006435943.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40612757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.13e-44WRKY DNA-binding protein 70