PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g021641m
Common NameCISIN_1g021641mg, LOC102631213
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family Dof
Protein Properties Length: 310aa    MW: 33749.2 Da    PI: 8.7798
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g021641mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.41.8e-3944103261
             zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                        ++++l+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+s
  orange1.1g021641m  44 PQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRS 103
                        6899******************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074788.0E-2843102IPR003851Zinc finger, Dof-type
PfamPF027012.4E-3346102IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.19948102IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105086IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009639Biological Processresponse to red or far red light
GO:0009845Biological Processseed germination
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MDAAKWPQNF PEVGGVKAME EVVSNTCNSS SSSRPPMLER KARPQEQLNC PRCNSTNTKF  60
CYYNNYSLTQ PRYFCKTCRR YWTEGGSLRN VPVGGGSRKN KRSISSSAAA ASSSNNNNNN  120
NNNYNKLIIP DLNPPSLSHF SSHENPKILK GGQDLNLGFQ VMHNNANDMS QYADHPAVAS  180
KAETNTTSND NINNNMSPVS ALDLLRTGIA SRAGLDHFIP TPMPDSNTLF SSGFPLQDIK  240
PAATLSFSID QANRFGIQDN IGNGSRLFFP FGELKQLSSA STTEVDHHSN KGTSTSTGYW  300
NGMFGGGSW*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.91790.0stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006491311.10.0dof zinc finger protein DOF2.5 isoform X1
RefseqXP_024043623.10.0dof zinc finger protein DOF2.5 isoform X1
TrEMBLA0A067H3D80.0A0A067H3D8_CITSI; Uncharacterized protein
TrEMBLV4U1W40.0V4U1W4_9ROSI; Uncharacterized protein
STRINGXP_006491311.10.0(Citrus sinensis)
STRINGXP_006444805.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25282673
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61850.43e-71Dof family protein