PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g021815m
Common NameCISIN_1g019764mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NF-YA
Protein Properties Length: 308aa    MW: 33508.3 Da    PI: 9.9652
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g021815mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.73.3e-32149205158
          CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                        +ep+YVNaKQy++Il+RRq+Rak+e ekk+ +k+rkpylheSRh+hA+rR+Rg+gGrF
  orange1.1g021815m 149 EEPVYVNAKQYRGILRRRQSRAKAELEKKV-IKARKPYLHESRHQHAMRRARGCGGRF 205
                        69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.5E-37147208IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.864148208IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.1E-27150205IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.9E-23151173IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860153173IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.9E-23182205IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MMPAKPDENR QLDRGAQSVS QSAIYSQRPW WSGTGTGASL AEAAAPKSSR EQPNGSVVNG  60
ATYSQDGING QEHAHLKHIP SSTPLTMGER LEQNSQMELV GHSIVLTSYP YTDPQHVGVI  120
TPYVPQAMIP PQLYGMHQAR MPLPLEMEEE PVYVNAKQYR GILRRRQSRA KAELEKKVIK  180
ARKPYLHESR HQHAMRRARG CGGRFLNTKK LNDNAANSAE KGMNSGADSS KGSTNGTGSV  240
DSSIVQQERA MEENAHMEHT SSNSNSNNRS LLSMYNTSSG SVEGNFLGQQ RGSMQGNGAP  300
RGALPVK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-19149209262NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.71880.0callus| fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006439109.10.0nuclear transcription factor Y subunit A-4
RefseqXP_006482871.10.0nuclear transcription factor Y subunit A-4-like
TrEMBLA0A067GUM50.0A0A067GUM5_CITSI; Uncharacterized protein
STRINGXP_006482871.10.0(Citrus sinensis)
STRINGXP_006439109.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.45e-37nuclear factor Y, subunit A1