PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g022872m

Common Name

CISIN_1g021641mg, LOC102631213

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Dof

Protein Properties

Length: 292aa MW: 31822 Da PI: 8.7837

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g022872m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.6	1.6e-39	26	85	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++++l+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+s orange1.1g022872m 26 PQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRS 85 6899******************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-28	25	84	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.2E-33	28	84	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.199	30	84	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	32	68	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009639	Biological Process	response to red or far red light
GO:0009845	Biological Process	seed germination
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MEEVVSNTCN SSSSSRPPML ERKARPQEQL NCPRCNSTNT KFCYYNNYSL TQPRYFCKTC 60 RRYWTEGGSL RNVPVGGGSR KNKRSISSSA AAASSSNNNN NNNNNYNKLI IPDLNPPSLS 120 HFSSHENPKI LKGGQDLNLG FQVMHNNAND MSQYADHPAV ASKAETNTTS NDNINNNMSP 180 VSALDLLRTG IASRAGLDHF IPTPMPDSNT LFSSGFPLQD IKPAATLSFS IDQANRFGIQ 240 DNIGNGSRLF FPFGELKQLS SASTTEVDHH SNKGTSTSTG YWNGMFGGGS W*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Csi.9179	0.0	stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Turned off in siliques when they reached full maturation. Not expressed in developing or mature embryos.
Uniprot	DEVELOPMENTAL STAGE: Turned off in siliques when they reached full maturation. Not expressed in developing or mature embryos.
Uniprot	TISSUE SPECIFICITY: Expressed in the phloem of the mother plant, including in roots, stem, leaves and flowers, but not present in the seed and embryo. In maturing siliques, found all through the funiculus connecting the placenta to the ovule, but not in the ovule.
Uniprot	TISSUE SPECIFICITY: Expressed in the vascular system of the mother plant, but not present in the seed and embryo. In maturing siliques, found all through the funiculus connecting the placenta to the ovule, but not in the ovule.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the activation of a component that would trigger germination as a consequence of red light perception.
UniProt	Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006491311.1	0.0	dof zinc finger protein DOF2.5 isoform X1
Refseq	XP_006491312.1	0.0	dof zinc finger protein DOF2.5 isoform X2
Refseq	XP_024043623.1	0.0	dof zinc finger protein DOF2.5 isoform X1
Refseq	XP_024043624.1	0.0	dof zinc finger protein DOF2.5 isoform X2
Swissprot	Q43385	4e-60	DOF37_ARATH; Dof zinc finger protein DOF3.7
Swissprot	Q9ZPY0	4e-60	DOF25_ARATH; Dof zinc finger protein DOF2.5
TrEMBL	A0A067H3D8	0.0	A0A067H3D8_CITSI; Uncharacterized protein
TrEMBL	A0A067H3T5	0.0	A0A067H3T5_CITSI; Uncharacterized protein
TrEMBL	V4U1W4	0.0	V4U1W4_9ROSI; Uncharacterized protein
STRING	XP_006491311.1	0.0	(Citrus sinensis)
STRING	XP_006444805.1	0.0	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.4	6e-65	Dof family protein

Link Out ? help Back to Top
Phytozome	orange1.1g022872m
Entrez Gene	102631213

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]