PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g023869m
Common NameCISIN_1g023869mg, LOC102618175
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family DBB
Protein Properties Length: 277aa    MW: 31227.5 Da    PI: 7.5588
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g023869mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.98.7e-08535636
           zf-B_box  6 CpeHeekelqlfCedCqqllCedClleeHkg 36
                       C+ ++++e++ fC  ++  lC  C    H+ 
  orange1.1g023869m  5 CDVCDKEEASVFCSADEAALCVACDRRVHHA 35
                       **************************99744 PP
2zf-B_box29.71.3e-095495237
           zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                       e + C+ ++e ++ lfC++++  lC++C   +Hk       H
  orange1.1g023869m 54 ESPLCDICQERRALLFCQEDRAILCRECDIPIHKAseytkkH 95
                       6789*****************************876666666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011911.064147IPR000315B-box-type zinc finger
SMARTSM003361.3E-9447IPR000315B-box-type zinc finger
CDDcd000212.50E-7545No hitNo description
PfamPF006438.1E-6542IPR000315B-box-type zinc finger
SMARTSM003362.1E-1453100IPR000315B-box-type zinc finger
PROSITE profilePS5011910.15353100IPR000315B-box-type zinc finger
PfamPF006435.1E-85496IPR000315B-box-type zinc finger
CDDcd000216.92E-1056100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0080167Biological Processresponse to karrikin
GO:1900458Biological Processnegative regulation of brassinosteroid mediated signaling pathway
GO:2000306Biological Processpositive regulation of photomorphogenesis
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MKIWCDVCDK EEASVFCSAD EAALCVACDR RVHHANKLAS KHPRFNLVSP SYKESPLCDI  60
CQERRALLFC QEDRAILCRE CDIPIHKASE YTKKHNRFLL TGVKLTASAS VTFNTTYNPS  120
PSSSTCCDTT KTTTTTSIDD QKKISPSSHS NSIFSSNSTP RDNHISDTSS ISEYLMETLP  180
GWRVDDFLDP PSYATSTNVL CKICDQDLER KMVYFSLLED LAIWVPLFSS QNGLLKGFEE  240
STEEARRLRV PQIRGQSVKK NRHVWLKLIS NVRLIC*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis. Plays a negative role in brassinosteroid responses. {ECO:0000269|PubMed:22535582}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006487328.10.0B-box zinc finger protein 20 isoform X1
SwissprotQ0IGM74e-69BBX20_ARATH; B-box zinc finger protein 20
TrEMBLA0A067DY200.0A0A067DY20_CITSI; Uncharacterized protein
STRINGXP_006487328.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65972743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.15e-62salt tolerance homolog2
Publications ? help Back to Top
  1. Wei CQ, et al.
    The Arabidopsis B-box protein BZS1/BBX20 interacts with HY5 and mediates strigolactone regulation of photomorphogenesis.
    J Genet Genomics, 2016. 43(9): p. 555-563
    [PMID:27523280]
  2. Thussagunpanit J, et al.
    Involvement of STH7 in light-adapted development in Arabidopsis thaliana promoted by both strigolactone and karrikin.
    Biosci. Biotechnol. Biochem., 2017. 81(2): p. 292-301
    [PMID:27858514]