PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g024014m
Common NameCISIN_1g019036mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NF-YA
Protein Properties Length: 275aa    MW: 29916.4 Da    PI: 10.2179
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g024014mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.63.6e-32101157158
          CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                        +ep+YVNaKQy +Il+RRq+Rak+e ekkl +k rkpylheSRh+hA+rR+RgsgGrF
  orange1.1g024014m 101 QEPVYVNAKQYMGILRRRQARAKAELEKKL-IKVRKPYLHESRHQHAMRRARGSGGRF 157
                        69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.6E-3599160IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.698100160IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.0E-28102157IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006167.3E-24103125IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860105125IPR018362CCAAT-binding factor, conserved site
PRINTSPR006167.3E-24134157IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010262Biological Processsomatic embryogenesis
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0055046Biological Processmicrogametogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MKKMMMLTKN HRLPHLHAGN HGQKNQNVQQ GASAMPTIRD ECFTQPPQLE LVGHSIACAS  60
NPYQDPYYGG MMAAYGHQPV GYPQFVGMPH ARMPLPLEMA QEPVYVNAKQ YMGILRRRQA  120
RAKAELEKKL IKVRKPYLHE SRHQHAMRRA RGSGGRFAKK TDDASKGNSE KKGGGSGIRP  180
SLSGSSSGSE PVPSDSAETW NSSASQQDVG GSQAHNMHEA RNHANANGGY QNHGLQASTY  240
HSHLGDRGET GDCSGKQWGS ISSNQASQRP LAIQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-18101157258NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.65250.0callus| flower| fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in inflorescence, stems, flowers and siliques. {ECO:0000269|PubMed:11867211}.
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006446125.10.0nuclear transcription factor Y subunit A-1 isoform X1
RefseqXP_006446126.10.0nuclear transcription factor Y subunit A-1 isoform X1
RefseqXP_006446127.10.0nuclear transcription factor Y subunit A-1 isoform X1
RefseqXP_006446128.10.0nuclear transcription factor Y subunit A-1 isoform X1
RefseqXP_006470619.10.0nuclear transcription factor Y subunit A-1
RefseqXP_006470620.10.0nuclear transcription factor Y subunit A-1
RefseqXP_006470621.10.0nuclear transcription factor Y subunit A-1
RefseqXP_006470622.10.0nuclear transcription factor Y subunit A-1
SwissprotQ945M93e-71NFYA9_ARATH; Nuclear transcription factor Y subunit A-9
TrEMBLA0A067F5760.0A0A067F576_CITSI; Uncharacterized protein
STRINGXP_006470619.10.0(Citrus sinensis)
STRINGXP_006446125.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.12e-68nuclear factor Y, subunit A9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]