PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g024223m
Common NameCISIN_1g024223mg, LOC102620244
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family CAMTA
Protein Properties Length: 271aa    MW: 31243.7 Da    PI: 9.2261
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g024223mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1118.82.7e-37121273117
               CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenpt 93 
                        ke k+rwlk+ee++ +L+n+ek+ lt++++++p+sgsl+L+n +++ +fr+DG+ w+k k+ + v E+he+L      +l cyYa +++np+
  orange1.1g024223m  12 KEaKSRWLKPEEVLFVLQNHEKFGLTEAPPQKPPSGSLFLFNTRILDFFREDGHIWRKMKNTRIVSEAHERLETADGLALDCYYAFGKQNPN 103
                        5669************************************************************************9*************** PP

               CG-1  94 fqrrcywlLeeelekivlvhylev 117
                        fqrr+y +    + + vlvhy++v
  orange1.1g024223m 104 FQRRVYSMAAYLYGHLVLVHYRDV 127
                        **********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143757.0227133IPR005559CG-1 DNA-binding domain
SMARTSM010764.0E-4810128IPR005559CG-1 DNA-binding domain
PfamPF038592.5E-3613127IPR005559CG-1 DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MQAGYEIDVL FKEAKSRWLK PEEVLFVLQN HEKFGLTEAP PQKPPSGSLF LFNTRILDFF  60
REDGHIWRKM KNTRIVSEAH ERLETADGLA LDCYYAFGKQ NPNFQRRVYS MAAYLYGHLV  120
LVHYRDVSLT KASITKVDLE CIFPITNFVL ELPSAVFDQL SSVRKPQYAL LSMLMSFAAL  180
LICIVELICT CRKQRVRWKW IRTLPWLYHP RNRPFCDFKD IIGPVCALCQ CIFAAVTYGF  240
ARQHADSPIK VSFWPIVFAS GLLLSKHLAK *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006492475.10.0uncharacterized protein LOC102620244
TrEMBLA0A067DQI30.0A0A067DQI3_CITSI; Uncharacterized protein
STRINGXP_006492475.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM383825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.11e-48Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains