PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g024229m

Common Name

CISIN_1g024229mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Dof

Protein Properties

Length: 271aa MW: 30146.4 Da PI: 8.8069

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g024229m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.4	7.6e-39	55	115	3	63
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 e+ l+cprC+st+tkfCyynnys sqPr+fCk+CrryWt+GG+lrnvPvGgg+rknk+sss orange1.1g024229m 55 ERVLNCPRCNSTDTKFCYYNNYSFSQPRHFCKTCRRYWTAGGSLRNVPVGGGSRKNKRSSS 115 67899****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-21	46	103	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.6E-33	56	112	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.273	58	112	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	60	96	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MDTAYHWPQK SQKSYYNLLY CFCNPSPICK GIGFVTPMEA GSNPTLERRP KPQRERVLNC 60 PRCNSTDTKF CYYNNYSFSQ PRHFCKTCRR YWTAGGSLRN VPVGGGSRKN KRSSSSSGLS 120 MNLTDLNTPC FPDQSAVSSD HNPNSTIHHE YHRDLKLAYP PNYTESKISS SSSASSSEFN 180 SFMGMPAAAS NSNANATCQS GNILLQEPKK TLDFSSSDGF ENNGARLWFP LQDIKPEISN 240 TTTDRFELNR GQAQAESTGY WTRLLGGGSW *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024948630.1	1e-172	dof zinc finger protein DOF4.6-like isoform X2
TrEMBL	A0A067F8Y7	0.0	A0A067F8Y7_CITSI; Uncharacterized protein
STRING	XP_006491972.1	1e-153	(Citrus sinensis)
STRING	XP_006441159.1	1e-153	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM33106	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64620.1	8e-28	Dof family protein

Link Out ? help Back to Top
Phytozome	orange1.1g024229m