PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g024288m
Common NameCISIN_1g019627mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 270aa    MW: 30380 Da    PI: 7.3667
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g024288mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.72e-0891116127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        +kt+lC  f   G C+ G++C+FaHg+
  orange1.1g024288m  91 FKTRLCAKFKH-GACRNGENCNFAHGM 116
                        69*******99.*************95 PP
2zf-CCCH30.18.4e-10154177225
                        -S---SGGGGTS--TTTTT-SS-S CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                        k++lC+ f+ + +C+yGdrC+F H
  orange1.1g024288m 154 KMKLCKKFYNGEECPYGDRCNFLH 177
                        789*******66************ PP
3zf-CCCH36.86.3e-12230255127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        +kt+lC  + + G+C++G++C+FaHg+
  orange1.1g024288m 230 WKTKLCIKWTQ-GQCPFGEKCHFAHGQ 255
                        8**********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.108.5E-1586123IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-888121IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-590116IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.22590117IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-691116IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.333152180IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-4152179IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.2E-7152179IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.1E-10154178IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-7154177IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-13225256IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-8228256IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-5229255IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.751229256IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-9230255IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MSFPNSSSPF LAQELQSYSA GSDAIGVWPQ FSMSDEQQYD RLSQYDQQPP FKRPRNYEDN  60
ESNSATYPPM NPRMNPSMNL PINKGITNIF FKTRLCAKFK HGACRNGENC NFAHGMEDLR  120
QPPPNWQELV GGGRAEEDRS SGGNWDDDQK IIHKMKLCKK FYNGEECPYG DRCNFLHEDP  180
AKFRDDSGRY RESSAISIGT TGPPVVTGSC SNQAEGNRPV GSNCVKPVYW KTKLCIKWTQ  240
GQCPFGEKCH FAHGQSGILC CLDHYILLH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006450980.10.0zinc finger CCCH domain-containing protein 39
RefseqXP_006475808.10.0zinc finger CCCH domain-containing protein 39
SwissprotQ9LT812e-77C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLA0A067GKR00.0A0A067GKR0_CITSI; Uncharacterized protein
STRINGXP_006475808.10.0(Citrus sinensis)
STRINGXP_006450980.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.12e-74C3H family protein