PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g024702m
Common NameCISIN_1g021851mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 265aa    MW: 29023.6 Da    PI: 8.3217
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g024702mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.33.1e-072281947
                       TTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding 19 lGggtWktIartmgkgRtlkqcksrwqky 47
                       +G g W+ I +++g ++t+ q++s+ qk+
  orange1.1g024702m  2 YGRG-WRQIEEHVG-TKTAVQIRSHAQKF 28
                       8999.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.697133IPR017930Myb domain
SuperFamilySSF466891.44E-5232IPR009057Homeodomain-like
CDDcd001670.00382229No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MYGRGWRQIE EHVGTKTAVQ IRSHAQKFFS KVVRESNGSS ESSIMPIEIP PPRPKRKPVH  60
PYPRKSVDSL KATSVSNQQE NFTSSNALVS DKDRQSPTSV VSAFNSDTLG CAASDQQNGC  120
SSPTSCTTEM HSVNLLPIEK ENEYVTSISF PKEEKISTLP AHLSASSNVE ELASVSKDSV  180
YPKGDAAAAP SCTSIKLFGR TVLVSDSWKP YSLGADSYKS PISKSSQENL DVDKKILSSQ  240
PHQSIWIHIY YLGWFLAIVI HPHI*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00146DAPTransfer from AT1G18330Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006441350.11e-157protein REVEILLE 7 isoform X1
TrEMBLA0A067DR780.0A0A067DR78_CITSI; Uncharacterized protein
TrEMBLA0A067DYI80.0A0A067DYI8_CITSI; Uncharacterized protein
STRINGXP_006441350.11e-156(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18330.12e-27MYB_related family protein