PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g025072m
Common NameCISIN_1g019307mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 259aa    MW: 28435 Da    PI: 5.5212
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g025072mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.31.7e-083272348
                       -HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48
                       +W++Ia++++  Rt++++k++w+++l
  orange1.1g025072m  3 RWAAIASYLP-QRTDNDIKNYWNTHL 27
                       4*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.087131IPR017930Myb domain
SuperFamilySSF466891.14E-7233IPR009057Homeodomain-like
PfamPF002497.3E-7327IPR001005SANT/Myb domain
CDDcd001675.78E-6326No hitNo description
Gene3DG3DSA:1.10.10.601.5E-12334IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0010468Biological Processregulation of gene expression
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MSRWAAIASY LPQRTDNDIK NYWNTHLKKK LKKLQTGSDG GQNNQDGFSS TSQQASNKGQ  60
WERRLQTDIH MAKQALCEAL SLDKTSPTSP ANLLLSPDQS NLKPMSSTTY NNTPYASNAE  120
NISRLLQNWM KNPPKISETT QDSFTNTAYA SAAGSGSNIS SEGALSATTP EGFDSLFSFN  180
SSNSDASQSE TTANLTSETS LFQDESKPKL DSRHHHHHQV PLTLLEKWLF DDVAAAHQGH  240
DDDDLINMSL EDSTVGFF*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}.
UniprotTISSUE SPECIFICITY: Expressed in flowers, leaves and weakly in seed pods. {ECO:0000269|PubMed:1840903}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00579DAPTransfer from AT5G62470Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0016702e-37KM001670.1 Pyrus x bretschneideri transcription factor MYB31 (MYB31) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006440595.10.0myb-related protein 306
SwissprotP813921e-60MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A067EWI50.0A0A067EWI5_CITSI; Uncharacterized protein
STRINGXP_006440595.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62470.15e-41myb domain protein 96
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]