PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g025137m
Common NameCISIN_1g022924mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GATA
Protein Properties Length: 258aa    MW: 27737.9 Da    PI: 6.7601
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g025137mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.51.4e-16201236134
               GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                        C++Cg ++  Tp++Rrgp+g+++LCnaCGl+++ kg
  orange1.1g025137m 201 CTHCGISSksTPMMRRGPSGPRSLCNACGLFWANKG 236
                        *****99999***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132015.0465100IPR010399Tify domain
SMARTSM009798.2E-1265100IPR010399Tify domain
PfamPF062001.5E-136899IPR010399Tify domain
PfamPF062033.6E-16132174IPR010402CCT domain
PROSITE profilePS5101712.531132174IPR010402CCT domain
PROSITE profilePS501149.882195254IPR000679Zinc finger, GATA-type
SMARTSM004012.7E-15195248IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.66E-11197243No hitNo description
Gene3DG3DSA:3.30.50.101.0E-15199241IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.15E-14200248No hitNo description
PROSITE patternPS003440201228IPR000679Zinc finger, GATA-type
PfamPF003202.2E-14201236IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MYGQSQSMNI SSQMSGGGAA ADEDDVSVAA DDHHLSYDPH SALENGIVVV EDVAHDSGYA  60
TGGNELSNSS QLTLSFRGQV YVFDSVTPDK VQAVLLLLGG CELSSSPQGM EVIPHSQRGI  120
ADYPAKCTQP QRAASLDRFR QKRKERCFDK KVRYSVRQEV ALRMQRNKGQ FTSAKKCEGG  180
ALGWSNAQDP GQDDSPSETS CTHCGISSKS TPMMRRGPSG PRSLCNACGL FWANKGALRD  240
LGKKMEDQPL TPAEQVC*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.14181e-124flower| fruit| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:10945256, ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00451DAPTransfer from AT4G24470Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006472435.10.0GATA transcription factor 25 isoform X1
RefseqXP_015384209.10.0GATA transcription factor 25 isoform X3
SwissprotQ9LRH63e-83GAT25_ARATH; GATA transcription factor 25
TrEMBLA0A067GNE20.0A0A067GNE2_CITSI; Uncharacterized protein
STRINGXP_006472435.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.28e-74GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]