PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g025221m
Common NameCISIN_1g023677mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 257aa    MW: 29230.9 Da    PI: 6.77
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g025221mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.99.8e-181057148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT++Ed llv+ v+++G ++W+ Ia+  g++Rt+k+c++rw +yl
  orange1.1g025221m 10 KGPWTEQEDILLVNFVQLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYL 57
                       79********************************************97 PP
2Myb_DNA-binding55.31.5e-1763108148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rg++T++E+ l +++++++G++ W++Iar+++ gRt++++k++w++++
  orange1.1g025221m  63 RGKMTPQEERLVLELHAKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 108
                        89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.368557IPR017930Myb domain
SuperFamilySSF466892.44E-308104IPR009057Homeodomain-like
SMARTSM007177.2E-16959IPR001005SANT/Myb domain
PfamPF002492.1E-161057IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-211164IPR009057Homeodomain-like
CDDcd001672.35E-111257No hitNo description
PROSITE profilePS5129427.50858112IPR017930Myb domain
SMARTSM007174.4E-1762110IPR001005SANT/Myb domain
PfamPF002495.4E-1663107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-2465111IPR009057Homeodomain-like
CDDcd001675.36E-1265108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MVVQQEEVRK GPWTEQEDIL LVNFVQLFGD RRWDFIAKVS GLNRTGKSCR LRWVNYLHPG  60
LKRGKMTPQE ERLVLELHAK WGNRWSRIAR KLPGRTDNEI KNYWRTHMRK KAQERKRAVS  120
SPSSSSSNYS SPSSTVTTVD SMPCPPPQGK ASFYDTGGND ETRVAAALVE EYETSCYSMD  180
DIWKDIELSE EKIMKQDGNG NVNFACPSPM AAPACWGYSS WDSIWKMDEA DEESKMMINL  240
PTDDQFISSW AATLTG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-2971121105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mainly expressed in leaves and seedlings, and to a lower extent, in roots, stems and inflorescences. Isoform MYB48-1, isoform MYB48-3 and isoform MYB48-4 are present in all of these organs, but isoform MYB48-2 is confined to leaves. {ECO:0000269|PubMed:16531467}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006488256.10.0transcription factor MYB59 isoform X2
SwissprotQ9LX824e-89MYB48_ARATH; Transcription factor MYB48
TrEMBLA0A067G0220.0A0A067G022_CITSI; Uncharacterized protein
STRINGXP_006488255.11e-160(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.12e-88myb domain protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]