PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g025268m

Common Name

CISIN_1g024675mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

HD-ZIP

Protein Properties

Length: 256aa MW: 29405.7 Da PI: 4.8303

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g025268m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.1	3.1e-18	48	101	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t +q+++Le+ Fe ++++ +++ +LA++lgL+ rq+ vWFqNrRa+ k orange1.1g025268m 48 KKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLK 101 56689***********************************************98 PP
2	HD-ZIP_I/II	124.5	5e-40	47	139	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl+ +qvk+LE++Fe ++kLep+rKv+la+eLglqprq+avWFqnrRAR k+k+lE+dy Lk++ydal+ + ++L++e+e+L++el+ orange1.1g025268m 47 EKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELERDYGLLKANYDALRLDYNNLQQENEALTAELR 138 69***************************************************************************************998 PP HD-ZIP_I/II 93 e 93 e orange1.1g025268m 139 E 139 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.43E-18	40	104	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.621	43	103	IPR001356	Homeobox domain
SMART	SM00389	8.6E-18	46	107	IPR001356	Homeobox domain
Pfam	PF00046	2.1E-15	48	101	IPR001356	Homeobox domain
CDD	cd00086	2.21E-15	48	104	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.8E-19	50	109	IPR009057	Homeodomain-like
PRINTS	PR00031	9.4E-6	74	83	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	78	101	IPR017970	Homeobox, conserved site
PRINTS	PR00031	9.4E-6	83	99	IPR000047	Helix-turn-helix motif
Pfam	PF02183	6.3E-15	103	144	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MGSETFDHFH EDKTSTKRKQ IYGREFQAMM DCLEEEDCRE EASQATEKKR RLTVDQVKAL 60 EKNFEVDNKL EPDRKVKLAE ELGLQPRQIA VWFQNRRARL KSKELERDYG LLKANYDALR 120 LDYNNLQQEN EALTAELREL KAKLCQENEE TSHAVEAEAP VSEQSKNHVS SENANAQLLT 180 SPPSFSPLFT GSSSSSHPSM NWVQFSDSRT ILSNVYQQPQ LVKVEEQSLL FNPEDPCNIF 240 SVDQAPTLQW YFTGH*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Csi.11787	0.0	flower

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024040105.1	0.0	homeobox-leucine zipper protein ATHB-6 isoform X2
Refseq	XP_024040106.1	0.0	homeobox-leucine zipper protein ATHB-6 isoform X2
TrEMBL	A0A067GMT7	0.0	A0A067GMT7_CITSI; Uncharacterized protein
STRING	XP_006472553.1	1e-180	(Citrus sinensis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65310.1	5e-50	homeobox protein 5

Link Out ? help Back to Top
Phytozome	orange1.1g025268m