PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g025303m

Common Name

CISIN_1g019764mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

NF-YA

Protein Properties

Length: 256aa MW: 28052.7 Da PI: 10.0808

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g025303m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	103.2	2.4e-32	97	153	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq+Rak+e ekk+ +k+rkpylheSRh+hA+rR+Rg+gGrF orange1.1g025303m 97 EEPVYVNAKQYRGILRRRQSRAKAELEKKV-IKARKPYLHESRHQHAMRRARGCGGRF 153 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	3.5E-37	95	156	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	37.864	96	156	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	8.4E-28	98	153	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.7E-23	99	121	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	101	121	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	1.7E-23	130	153	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MATILMKVGF SITDGINGQE HAHLKHIPSS TPLTMGERLE QNSQMELVGH SIVLTSYPYT 60 DPQHVGVITP YVPQAMIPPQ LYGMHQARMP LPLEMEEEPV YVNAKQYRGI LRRRQSRAKA 120 ELEKKVIKAR KPYLHESRHQ HAMRRARGCG GRFLNTKKLN DNAANSAEKG MNSGADSSKG 180 STNGTGSVDS SIVQQERAME ENAHMEHTSS NSNSNNRSLL SMYNTSSGSV EGNFLGQQRG 240 SMQGNGAPRG ALPVK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	5e-20	97	160	2	65	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Csi.7188	0.0	callus\| fruit

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in inflorescence, stems, flowers and siliques. {ECO:0000269\|PubMed:11867211}.

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006439109.1	1e-166	nuclear transcription factor Y subunit A-4
Refseq	XP_006482871.1	1e-166	nuclear transcription factor Y subunit A-4-like
Swissprot	Q945M9	2e-41	NFYA9_ARATH; Nuclear transcription factor Y subunit A-9
TrEMBL	A0A067GUW9	0.0	A0A067GUW9_CITSI; Uncharacterized protein
STRING	XP_006482871.1	1e-165	(Citrus sinensis)
STRING	XP_006439109.1	1e-165	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12840.4	3e-35	nuclear factor Y, subunit A1

Link Out ? help Back to Top
Phytozome	orange1.1g025303m

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]