PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g025402m
Common NameCISIN_1g025097mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family WRKY
Protein Properties Length: 254aa    MW: 28275 Da    PI: 8.898
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g025402mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.11.8e-2893153159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-ST..T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa..gCpvkkkversaedpkvveitYegeHnhe 59 
                        ++Dg++WrKYGqK+ k+++ pr+Y+rC++a  gCpvkkkv+r+ ed+++++ tYegeHnh+
  orange1.1g025402m  93 VKDGHQWRKYGQKVTKDNPSPRAYFRCSMAssGCPVKKKVQRCMEDKSFLVATYEGEHNHD 153
                        58**************************9999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.9E-2985154IPR003657WRKY domain
PROSITE profilePS5081126.79688155IPR003657WRKY domain
SuperFamilySSF1182904.58E-2591154IPR003657WRKY domain
SMARTSM007749.4E-3293154IPR003657WRKY domain
PfamPF031066.1E-2494153IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MMILQMKLLQ AKLEHVRKQN ENLRHLVKAM NNQCNDLLAR IHEANRTYSS SDHHHFNNNI  60
NIGGVTAQVP PVPNAKQSRI FVKADSKDSS LIVKDGHQWR KYGQKVTKDN PSPRAYFRCS  120
MASSGCPVKK KVQRCMEDKS FLVATYEGEH NHDVQCSSLG QSSSLTNYCS PKSSIVHCPD  180
YQTTDSFGSD VTLDLTLSGS NQETRPPRNL MQVCDDKKKI EEYVASLTKD PSFTIAVADA  240
VASSINGPPH RPM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-20921541373WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ8199550.0KJ819955.1 Citrus japonica WRKY40 (WRKY40) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006483475.10.0WRKY transcription factor WRKY76
TrEMBLA0A067FMS20.0A0A067FMS2_CITSI; Uncharacterized protein
TrEMBLA0A2H5NWY60.0A0A2H5NWY6_CITUN; Uncharacterized protein
STRINGXP_006483475.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.13e-39WRKY DNA-binding protein 40