PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g025411m
Common NameCISIN_1g022728mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GATA
Protein Properties Length: 254aa    MW: 28000.1 Da    PI: 6.4212
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g025411mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.46.4e-16215249133
               GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33 
                        C++Cg ++  Tp++Rrgp+g++tLCnaCGl+++ k
  orange1.1g025411m 215 CRHCGISEksTPMMRRGPEGPRTLCNACGLMWANK 249
                        *****99999**********************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.63371106IPR010399Tify domain
SMARTSM009796.8E-1171106IPR010399Tify domain
PfamPF062001.8E-1277105IPR010399Tify domain
PROSITE profilePS5101713.106139181IPR010402CCT domain
PfamPF062031.2E-15139181IPR010402CCT domain
SMARTSM004011.1E-5209251IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.19E-10210249No hitNo description
Gene3DG3DSA:3.30.50.104.2E-14213249IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.11E-12214249No hitNo description
PROSITE patternPS003440215242IPR000679Zinc finger, GATA-type
PfamPF003208.7E-14215249IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MDHGSNPQMQ MSDEQHAIHH VNYVPEHELH HISNGDVMDD EHDEGNGVGE SEAMEGDAPS  60
DPGSLSDNRA VSEIGDQLTL SFQGQVYVFD SVSPEKVQAV LLLLGGREVP STTPAIPIAN  120
NQNNRGLPGT PQRLSVPQRL ASLIRFREKR KERNFEKKIR YTVRKEVALR MQRNKGQFTS  180
AKSNNEDSAS AISSWGSNQS WAGDVNGSQN QDIVCRHCGI SEKSTPMMRR GPEGPRTLCN  240
ACGLMWANKV REL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.54080.0fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006465167.10.0GATA transcription factor 28 isoform X1
RefseqXP_006465168.10.0GATA transcription factor 28 isoform X1
RefseqXP_024955227.10.0GATA transcription factor 28 isoform X1
SwissprotQ8H1G01e-118GAT28_ARATH; GATA transcription factor 28
TrEMBLA0A067DS240.0A0A067DS24_CITSI; Uncharacterized protein
STRINGXP_006465167.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.21e-106ZIM-LIKE 2