PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g025477m
Common NameCISIN_1g025477mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 253aa    MW: 28838 Da    PI: 7.8958
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g025477mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.52.8e-1466117255
                        HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +  hn+ Er RR++iNs ++ Lr+llP a   + kKls  +++ ++ +YI +Lq
  orange1.1g025477m  66 KLYHNASERDRRKKINSLYSSLRSLLPVA--DQTKKLSIPATVSRVLKYIPELQ 117
                        567*************************6..48888***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.80264116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.62E-565121No hitNo description
SuperFamilySSF474593.66E-1665136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.3E-1466134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-1166117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.7E-1170122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MCALFPPFFP SLGWPLEINP ICHQQDYITE TIEESPQFPQ ESEPQAEFDR SASFSANSGD  60
PTMVKKLYHN ASERDRRKKI NSLYSSLRSL LPVADQTKKL SIPATVSRVL KYIPELQQQV  120
ERLMQKKEEL LSKISKPGEI SHQQHQRKIA IGSSLASISA SRLSDMEILI QISSYKVHKC  180
PLSKILFNLE EDGLVLVNAS FFESFQGRVF YNLHLQVKST YGLDCEVLNE KLKSFYNEKR  240
EDLFPSNFGC KN*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006494391.20.0transcription factor ORG2
TrEMBLA0A067DMC30.0A0A067DMC3_CITSI; Uncharacterized protein
TrEMBLA0A2H5QLA50.0A0A2H5QLA5_CITUN; Uncharacterized protein
STRINGXP_006494391.11e-121(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48228153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.11e-57bHLH family protein