PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g025532m

Common Name

CISIN_1g025532mg, LOC102624315

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

FAR1

Protein Properties

Length: 252aa MW: 28501 Da PI: 6.7217

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g025532m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	91	1.6e-28	87	174	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGF +r+sk ++s+r+g+ + r +vC+keg+r ++k++ k r+raetr+gC+a++ v+k ++g+w+vtk+++eH+H+l+p orange1.1g025532m 87 FYNAYATRVGFVIRVSKLSRSRRDGSAIGRALVCNKEGYRLPDKRE--KIVRQRAETRVGCRAMILVRKVNSGQWVVTKFVKEHTHPLTP 174 ****************************************9988..9************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.7E-26	87	174	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MDYRIDSNVN GELVGNSVDV GDRVGNEDEI YRTSVEVTLH QDQDNKVDPD SLALETIPEG 60 IPSVASVQAD EPYVGQQFES EAAAHAFYNA YATRVGFVIR VSKLSRSRRD GSAIGRALVC 120 NKEGYRLPDK REKIVRQRAE TRVGCRAMIL VRKVNSGQWV VTKFVKEHTH PLTPGKGRKD 180 CIYDQYPNEH DKIRELSQQL ALEKKRAANY KRHLELIVEQ IEEHNESLAK KIQHVVDSVK 240 NIEDEEQKSC T*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006443010.1	0.0	protein FAR1-RELATED SEQUENCE 6
Refseq	XP_006478716.1	0.0	protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A067DXF7	0.0	A0A067DXF7_CITSI; Uncharacterized protein
TrEMBL	A0A2H5QLZ5	0.0	A0A2H5QLZ5_CITUN; Uncharacterized protein
TrEMBL	V4TX02	0.0	V4TX02_9ROSI; Uncharacterized protein
STRING	XP_006478716.1	0.0	(Citrus sinensis)
STRING	XP_006443010.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7302	25	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	1e-102	FAR1 family protein

Link Out ? help Back to Top
Phytozome	orange1.1g025532m
Entrez Gene	102624315