PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g025728m

Common Name

CISIN_1g025728mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

G2-like

Protein Properties

Length: 250aa MW: 28076.7 Da PI: 9.2567

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g025728m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.5	1.1e-31	11	65	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLH rF eav+qLGG+++AtPk il++m+v+gLt++hvkSHLQkYR+ orange1.1g025728m 11 KERLRWTQELHYRFEEAVNQLGGPDRATPKGILKAMGVPGLTIYHVKSHLQKYRI 65 68****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.497	8	68	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.4E-30	9	66	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.66E-18	10	65	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.6E-24	11	66	IPR006447	Myb domain, plants
Pfam	PF00249	1.0E-9	13	64	IPR001005	SANT/Myb domain
Pfam	PF14379	2.7E-15	96	140	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MGSNRSDGSG KERLRWTQEL HYRFEEAVNQ LGGPDRATPK GILKAMGVPG LTIYHVKSHL 60 QKYRISKYIP EIGPSKFERR NISDMLPNFG TTSAAQLNEA LQMQTDVYRR MSDHVEVQRN 120 LKLKIEAQGR FLDRIVKDHK NRATPNTKSG KPYSPVSLPA LCEETESNAK DFESDSEADK 180 NEIESGEGIR ALKRLRVEDD TLPPMFRVSS LSPNSYNRDI QAKASYPAQD ISFPWSFAAC 240 SSPLVPSFL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-23	10	68	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-23	10	68	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-23	10	68	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-23	10	68	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-23	10	68	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-23	10	68	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-23	10	68	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-23	10	68	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006429402.2	0.0	myb family transcription factor PHL7
Refseq	XP_006481047.1	0.0	myb family transcription factor PHL7-like
Swissprot	Q9SJW0	3e-48	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A067ENA9	0.0	A0A067ENA9_CITSI; Uncharacterized protein
STRING	XP_006481047.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16802	10	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	1e-50	G2-like family protein

Link Out ? help Back to Top
Phytozome	orange1.1g025728m