PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g025751m
Common NameCISIN_1g023148mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 249aa    MW: 27561.5 Da    PI: 6.177
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g025751mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-1874124256
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g+
  orange1.1g025751m  74 TYRGVRMRQ-WGKWVSEIREPRK---KSRIWLGTFATPEMAARAHDVAALAIKGH 124
                        69****998.**********843...6***********************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.86674131IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.1E-3274132IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-2274132IPR016177DNA-binding domain
PfamPF008471.1E-1274124IPR001471AP2/ERF domain
SMARTSM003804.0E-3774137IPR001471AP2/ERF domain
PRINTSPR003673.7E-107586IPR001471AP2/ERF domain
CDDcd000181.52E-3275133No hitNo description
PRINTSPR003673.7E-1097113IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MEVSLNTENE AQATTSSSHP CSARESTSSS SSSPTKTVKS FKRIIIQEEK TKTASDNDHH  60
ESKTRKVSDL KHPTYRGVRM RQWGKWVSEI REPRKKSRIW LGTFATPEMA ARAHDVAALA  120
IKGHSAYLNF PELAHELPRP ATSSPKDIQA AAAKAAAIVS LPKGQELTNP PSPASTVTSH  180
DTQESASSPL LNNDDDDAFF DLPDLLLDGR HQMDELWDSF SWQQLTEPVS EPVGFGFWYD  240
QEPCHYNS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-17721311272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00292DAPTransfer from AT2G35700Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024044746.11e-174ethylene-responsive transcription factor ERF038 isoform X1
SwissprotQ9ZQP32e-58ERF38_ARATH; Ethylene-responsive transcription factor ERF038
TrEMBLA0A067F2140.0A0A067F214_CITSI; Uncharacterized protein
TrEMBLA0A2H5NUU10.0A0A2H5NUU1_CITUN; Uncharacterized protein
STRINGXP_006440269.11e-175(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35700.18e-49ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]