PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g025759m
Common NameCISIN_1g023982mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family WRKY
Protein Properties Length: 249aa    MW: 28387.7 Da    PI: 4.7906
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g025759mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY49.31e-1548882059
                       S-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY 20 fprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                       + r+YYrC+++ gC++kk+ver+++d ++++itY+++Hnh+
  orange1.1g025759m 48 NCRGYYRCSTSkGCSAKKQVERCRTDASMLIITYTSSHNHP 88
                       579*****9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007747.5E-123789IPR003657WRKY domain
SuperFamilySSF1182902.75E-134790IPR003657WRKY domain
PfamPF031063.0E-134888IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.5E-164890IPR003657WRKY domain
PROSITE profilePS5081118.8885090IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MMWIISHLSA ALLSQFSKIK DVFRGSNWIF ITHLVPHQDV LKWILPLNCR GYYRCSTSKG  60
CSAKKQVERC RTDASMLIIT YTSSHNHPCP DLHTINLTKQ SKETPQNHQP TGTEFEDHHP  120
TSAPTQEQQL PQEEEKQNEP PIITTPTAED SNEDHFHYLQ SPIRCPQDII ISQEDPFTGN  180
LEKPNETLNL LLDEEPVSYQ NLMAFSTPKS EENDFFDELG ELPSTSSVFT SFMRSNDLFD  240
ERIPVVPS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ3187944e-45JQ318794.1 Morella rubra microsatellite ZJU099 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006492342.11e-145probable WRKY transcription factor 65
TrEMBLA0A067HG180.0A0A067HG18_CITSI; Uncharacterized protein
STRINGXP_006492342.11e-144(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.15e-18WRKY family protein