PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g025781m
Common NameCISIN_1g025781mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HSF
Protein Properties Length: 249aa    MW: 28683.8 Da    PI: 5.0105
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g025781mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.52.4e-34311222102
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Fl k+y ++ed++++++isw+ +g+ fvv+++ efa+++Lp+ Fkhsnf+SFvRQLn+YgF+kv +++         weF ++ F+kg+k+l
  orange1.1g025781m  31 FLLKTYMLIEDPATDNVISWNGDGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSR---------WEFCNQMFRKGEKDL 113
                        9****************************************************************999.........*************** PP

                        XXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkks 102
                        l+ki+r+k 
  orange1.1g025781m 114 LCKIRRRKA 122
                        ******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.5E-3624115IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.72E-3327120IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.8E-5027120IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.2E-3031120IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-183154IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-186981IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407094IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-188294IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MEATNNITIS SCCDDNKGLL EYARKSTPPP FLLKTYMLIE DPATDNVISW NGDGTGFVVW  60
QPAEFARDLL PTLFKHSNFS SFVRQLNTYG FRKVATSRWE FCNQMFRKGE KDLLCKIRRR  120
KAWANRQQAA TAAATQQESH DEDQRSSSST SSLSEYNTLR DENKRLKKEN GNLSSELVSM  180
KRKCKELLDL VTKYANMDND DDDDDDDDED DDDHEINNNQ RGPLIVKLFG VRFEVDEGER  240
ERKRKRES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5w_B2e-20311204104Putative transcription factor
5d5x_B2e-20311204104Putative transcription factor
5d5x_E2e-20311204104Putative transcription factor
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.107200.0fruit| leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00305DAPTransfer from AT2G41690Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006492933.11e-153heat stress transcription factor B-3-like
SwissprotO222308e-71HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A067EAI20.0A0A067EAI2_CITSI; Uncharacterized protein
STRINGXP_006492933.11e-152(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM108142731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.16e-65heat shock transcription factor B3