PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g025990m

Common Name

CISIN_1g025990mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

NAC

Protein Properties

Length: 246aa MW: 27560.7 Da PI: 9.9859

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g025990m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	119.3	3.5e-37	15	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkya..tgkrknratksgyWkatgkdk 90 lp G+rF+Ptdeelvv+yLk+kv g +l++ ++i+e+d+++++P Lp + +ek+ yfFs+ ++++a ++ + + a+ sgyWk gk++ orange1.1g025990m 15 LPIGYRFRPTDEELVVHYLKRKVFGLPLPA-SIIPELDVFQSHPLGLPGDM--KEKKRYFFSNIRNESAidNDGKCKIAAGSGYWKPVGKNR 103 699*************************.89***********665..6789999888877434555555999******** PP NAM 91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++l++ ++++vg++ktL+f +g++ + +kt+Wvmh+y+l orange1.1g025990m 104 QILASgTKQVVGIRKTLIFCEGKRGHETKTQWVMHQYHL 142 9967778**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-43	9	172	IPR003441	NAC domain
PROSITE profile	PS51005	42.552	15	172	IPR003441	NAC domain
Pfam	PF02365	2.3E-21	16	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MEKQNNYVVN GGLKLPIGYR FRPTDEELVV HYLKRKVFGL PLPASIIPEL DVFQSHPLGL 60 PGDMKEKKRY FFSNIRNESA IDNDGKCKIA AGSGYWKPVG KNRQILASGT KQVVGIRKTL 120 IFCEGKRGHE TKTQWVMHQY HLVAIATNTN LTQPVFKMVI IGDWVVYRIF QRKKKPKKRG 180 VVSSNNLNIT KNSHKNQLQV IDFSVIEADQ TDLLGPPPQP VSSCSSEITA DELSPSVLDQ 240 EETSA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-29	13	178	15	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-29	13	178	15	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-29	13	178	15	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-29	13	178	15	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-29	13	178	18	174	NAC domain-containing protein 19
3swm_B	2e-29	13	178	18	174	NAC domain-containing protein 19
3swm_C	2e-29	13	178	18	174	NAC domain-containing protein 19
3swm_D	2e-29	13	178	18	174	NAC domain-containing protein 19
3swp_A	2e-29	13	178	18	174	NAC domain-containing protein 19
3swp_B	2e-29	13	178	18	174	NAC domain-containing protein 19
3swp_C	2e-29	13	178	18	174	NAC domain-containing protein 19
3swp_D	2e-29	13	178	18	174	NAC domain-containing protein 19
4dul_A	2e-29	13	178	15	171	NAC domain-containing protein 19
4dul_B	2e-29	13	178	15	171	NAC domain-containing protein 19
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	170	177	QRKKKPKK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Csi.6664	1e-151	fruit\| stem

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006447003.1	0.0	NAC domain-containing protein 83
Refseq	XP_006468841.1	0.0	NAC domain-containing protein 83-like
TrEMBL	A0A067F930	0.0	A0A067F930_CITSI; Uncharacterized protein
STRING	XP_006468841.1	0.0	(Citrus sinensis)
STRING	XP_006447003.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7874	25	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14000.1	3e-53	NAC domain containing protein 84

Link Out ? help Back to Top
Phytozome	orange1.1g025990m