PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g025998m

Common Name

CISIN_1g025998mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Dof

Protein Properties

Length: 246aa MW: 27535.3 Da PI: 4.6557

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g025998m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119.9	9.3e-38	11	69	4	62
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +a +cprC s ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rkn +++ orange1.1g025998m 11 TAPSCPRCASPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNGRAK 69 5678**************************************************98765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-28	1	67	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.5E-31	13	66	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.295	13	67	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	15	51	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MEKKWKPDVE TAPSCPRCAS PNTKFCYYNN YSLSQPRYFC KGCRRYWTKG GSLRNVPVGG 60 GCRKNGRAKS SRRKSPFNND RPKASCSSDH TDDAVSTPNG GSDIDLAVVF ANSSTPDNVV 120 QNDDFNVHNV MGNGDLNILG EFPQVFGQLQ EEEDRRVQDF LEDDMVNAHG LQALLGDEIV 180 DHQVALWSDQ AETETLPNFT WQRAMFQLQD FDSFPADDQL KASANLISDN WTSFDLPGFE 240 LYSRP*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006434423.2	1e-179	dof zinc finger protein DOF1.2
Swissprot	P68349	9e-44	DOF12_ARATH; Dof zinc finger protein DOF1.2
TrEMBL	A0A067H7W4	0.0	A0A067H7W4_CITSI; Uncharacterized protein
STRING	XP_006434423.1	1e-178	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6462	26	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21340.1	4e-46	Dof family protein

Link Out ? help Back to Top
Phytozome	orange1.1g025998m