PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g026043m
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MIKC_MADS
Protein Properties Length: 245aa    MW: 27907.6 Da    PI: 8.4743
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g026043mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF100.18.3e-32959151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifss+gklye++s
  orange1.1g026043m  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCS 59
                       79***********************************************96 PP
2K-box73.65.8e-25751741100
              K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 
                        y++ + +++++++++ +++e+ kLk++ e Lq+ qR++ GedL++L l+eL+qLe+qL +sl ++Rs K++  l++++elq+ke++l e+n+
  orange1.1g026043m  75 YGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQFFGEDLGRLGLEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANN 166
                        56788899999********************************************************************************* PP

              K-box  93 aLrkklee 100
                         L++klee
  orange1.1g026043m 167 ILSMKLEE 174
                        *****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.473161IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-42160IPR002100Transcription factor, MADS-box
CDDcd002654.88E-45279No hitNo description
SuperFamilySSF554554.84E-34284IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-33323IPR002100Transcription factor, MADS-box
PfamPF003191.7E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-333859IPR002100Transcription factor, MADS-box
PfamPF014867.5E-2085172IPR002487Transcription factor, K-box
PROSITE profilePS5129713.54588178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFCSS  60
PSMHKTLEKY ERCSYGTLQA NHQSAKETQA SYEEYIKLKE KHEALQHLQR QFFGEDLGRL  120
GLEELEQLER QLGSSLGRVR SLKTRNQLDK LSELQRKEEM LLEANNILSM KLEEINAARR  180
SHPWAAEEQN ITYSNQPAHS EGSFGHLHSN GTLHLGHNPG VTAHERTVAT SEQDVHSLIP  240
GWML*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-21170169MEF2C
5f28_B1e-21170169MEF2C
5f28_C1e-21170169MEF2C
5f28_D1e-21170169MEF2C
6byy_A1e-21170169MEF2 CHIMERA
6byy_B1e-21170169MEF2 CHIMERA
6byy_C1e-21170169MEF2 CHIMERA
6byy_D1e-21170169MEF2 CHIMERA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.71810.0fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and seeds. {ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7022994e-57KP702299.1 Mangifera indica SEPALLATA1-like protein (SEP1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006484241.11e-180developmental protein SEPALLATA 1-like isoform X2
SwissprotQ8LLR23e-98MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLA0A2H5NWP41e-179A0A2H5NWP4_CITUN; Uncharacterized protein
STRINGXP_006437878.11e-178(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3340522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02310.14e-82MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]