PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g026116m

Common Name

CISIN_1g023462mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Nin-like

Protein Properties

Length: 244aa MW: 26876.3 Da PI: 9.6659

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g026116m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	23.4	1.2e-07	16	34	31	49
RWP-RK 31 vLKriCRqyGIkRWPhRki 49 ++ +iCR +G++RWP+Rk orange1.1g026116m 16 IISKICRDNGLDRWPYRKF 34 6779**************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	9.955	1	56	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MISPNISLSL SPTPPIISKI CRDNGLDRWP YRKFLSGKSI EDIKKYAARE KSKELAELSK 60 IARKSGFQPL SNETSKLHGV TSPPNLQQQG SKNSPVGQPH VLLNANLTKG IMALDEFKHG 120 FPSDGLSTAS YKWWGGRSSD GNDGIHKDES EIDEEDKQAE AKADKESATQ ATGNEKSGNG 180 ETESNVDPQG SGLLTAARKR TVEEGREALK LGVYKKYCVK QLDRKERVLL HRIFKSSLPK 240 EWL*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Csi.6169	0.0	callus\| stem

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KX064679	0.0	KX064679.1 Citrus trifoliata clone 2 RWP-RK domain containing protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006437156.1	1e-160	protein NLP3
Refseq	XP_006484885.1	1e-160	protein NLP3
TrEMBL	A0A067FBY6	1e-178	A0A067FBY6_CITSI; Uncharacterized protein
STRING	XP_006484885.1	1e-160	(Citrus sinensis)
STRING	XP_006437156.1	1e-160	(Citrus clementina)

Link Out ? help Back to Top
Phytozome	orange1.1g026116m