PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g026135m
Common NameCISIN_1g021503mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 244aa    MW: 26286.5 Da    PI: 9.7424
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g026135mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.57.3e-0920432347
                       -HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47
                       +W++Ia +++ gRt++++k++w+++
  orange1.1g026135m 20 SWSLIAGRLP-GRTDNEIKNYWNTH 43
                       7*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.502148IPR017930Myb domain
SuperFamilySSF466896.32E-81856IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.3E-131945IPR009057Homeodomain-like
PfamPF002497.8E-72043IPR001005SANT/Myb domain
CDDcd001674.63E-62144No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010224Biological Processresponse to UV-B
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:1903086Biological Processnegative regulation of sinapate ester biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MKKMNSLSNS IASLVTSKSS WSLIAGRLPG RTDNEIKNYW NTHIRRKLLN RGIDPATHRP  60
LNEPAVPVAA AQSATTAAPA DVAAAAAAAA TTTTTISFSA AAAAKEDIKR EKRTIGFVCK  120
NEKQPYHHHN HHRHRQQQQV IVKEEEVTCP DLNLELRISP PSSADLHQQQ PLIKTGGRSS  180
SLCLACSLGL QNSKGCSCNN NNNNNTNSMI SSSNTSSSSS SSTCYDFLGL KSGVLDYRSL  240
EMK*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00479DAPTransfer from AT4G38620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006486752.11e-104myb-related protein 308
TrEMBLA0A067FXU61e-180A0A067FXU6_CITSI; Uncharacterized protein
STRINGXP_006486752.11e-104(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16720.11e-25myb domain protein 7