PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g026161m

Common Name

CISIN_1g026161mg, LOC102629897

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

ZF-HD

Protein Properties

Length: 243aa MW: 26374.4 Da PI: 7.2332

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g026161m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	101.8	4.5e-32	48	103	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 k+rY+eClkNhA+ +Ggha+DGCgEfm++ g+egt ++lkCaAC+CHRnFHR+ev++ orange1.1g026161m 48 KARYRECLKNHAVGIGGHALDGCGEFMAA-GDEGTLDGLKCAACNCHRNFHRKEVDS 103 789***********************9.999*******************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	1.9E-28	49	101	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	5.3E-29	50	101	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	7.0E-23	50	103	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.067	51	100	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	8.6E-32	166	241	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.35E-19	169	240	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	2.0E-25	179	235	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0003677	Molecular Function	DNA binding
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MEFEDHEEQE EEMGLPAGYD SSLGNSSQVR MGSSGGQATA EAAHPGRKAR YRECLKNHAV 60 GIGGHALDGC GEFMAAGDEG TLDGLKCAAC NCHRNFHRKE VDSSVVTPMA AGVPAAGGGE 120 VFFHPSQVPQ FTPYYRTPAG YLHVAAHHRP LALPSTSGGG HSREDQEDAS NLGGSGGSRK 180 RFRTKFTPEQ KDRMLELAEK LGWRIQKHDE EVVQQFCNDT GVKRHVLKVW MHNNKHTLGK 240 KP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	1e-25	180	237	18	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006426297.1	0.0	zinc-finger homeodomain protein 2
Refseq	XP_006466284.1	0.0	zinc-finger homeodomain protein 2
Swissprot	A2Z259	7e-81	ZHD1_ORYSI; Zinc-finger homeodomain protein 1
Swissprot	Q6YXH5	7e-81	ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBL	A0A067FAZ1	0.0	A0A067FAZ1_CITSI; Uncharacterized protein
TrEMBL	V4SG21	0.0	V4SG21_9ROSI; Uncharacterized protein
STRING	XP_006466284.1	0.0	(Citrus sinensis)
STRING	XP_006426297.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4505	24	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	9e-71	homeobox protein 22

Link Out ? help Back to Top
Phytozome	orange1.1g026161m
Entrez Gene	102629897

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]