PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g026226m
Common NameCISIN_1g0262261mg, LOC102629216
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 242aa    MW: 28441.4 Da    PI: 8.3418
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g026226mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.62.6e-141552401698
                        EE--HHH.HTT---..--SEEEEEETTS.....-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                 B3  16 lvlpkkfaeehggkkeesktltledesg.....rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                        +++p +fa ++ +++ +s  ++l+ ++      rs +   i+++  g+++lt+GW +F   ++Lk+gD+++Fkl++r++  l ++vfr
  orange1.1g026226m 155 VYVPASFAYRFVNQNVKS--IKLRGSNAelnlpRSDKSVRIWWRDNGGFYLTRGWMKFSTHKNLKDGDICIFKLIDRKDVLLELSVFR 240
                        678999987775554554..7777766677888666666679*********************************9988889888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.8146IPR003340B3 DNA binding domain
CDDcd100172.91E-8244No hitNo description
SuperFamilySSF1019363.53E-13253IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.1E-14258IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.4E-13134240IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.47E-12136230IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.137140241IPR003340B3 DNA binding domain
PfamPF023622.5E-11154240IPR003340B3 DNA binding domain
CDDcd100171.75E-8188240No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MKNGRRFSFG DGWQDFVASN SISVGYFLVF RYEKNSTFQV LIHDMTACEI DYPYSDEESD  60
EWSSEFEDDM ESEECVEISK ELFSSKCRCQ RQKKSKVKGL FRNLLENMGM YISEKSEDFT  120
VEESERAIKI VRSLKLKDPS FMVIFRKREK PCREVYVPAS FAYRFVNQNV KSIKLRGSNA  180
ELNLPRSDKS VRIWWRDNGG FYLTRGWMKF STHKNLKDGD ICIFKLIDRK DVLLELSVFR  240
A*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006487853.11e-178B3 domain-containing transcription factor VRN1
RefseqXP_024957717.11e-178B3 domain-containing transcription factor VRN1
TrEMBLA0A067EDH61e-176A0A067EDH6_CITSI; Uncharacterized protein
STRINGXP_006487853.11e-177(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3331922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.11e-12related to vernalization1 1