PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g026263m
Common NameCISIN_1g026263mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HSF
Protein Properties Length: 242aa    MW: 26755.2 Da    PI: 9.1618
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g026263mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind71.71.4e-22157336103
                        HHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXXX CS
       HSF_DNA-bind  36 fakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkkse 103
                        fak++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF++++F++g++ell++i+r+k++
  orange1.1g026263m  15 FAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADK---------WEFANENFRRGHRELLTEIRRRKTA 73 
                        99*****************************999.........**********************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.7E-21270IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.62E-181470IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.2E-211570IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.3E-191570IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-101931IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043402044IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-103244IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009408Biological Processresponse to heat
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MKVAPLLLSG KLLIFAKDLL PNYFKHNNFS SFVRQLNTYG FRKIVADKWE FANENFRRGH  60
RELLTEIRRR KTATGPSAQT AGKTKATSPS NSGEDMGSTS TSSPESKNQG SVETAKFADL  120
SDENAKLRRD NETLSSELAQ AKKQCDELIT FLTEYVKVGP DQINRIMGQG SCGSILDGLV  180
GDTDDDEKME SSGGDLKLFG VWLKGERKKR AREETVVCGG SHEMKKVEFR APYINSSKVC  240
N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-14157454124Heat shock factor protein 1
5d5u_B2e-14157263131Heat shock factor protein 1
5d5v_B2e-14157263131Heat shock factor protein 1
5d5v_D2e-14157263131Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.37840.0fruit
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006466606.11e-168heat shock factor protein HSF24
SwissprotP223357e-83HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBLA0A067GUZ01e-179A0A067GUZ0_CITSI; Uncharacterized protein
STRINGXP_006466606.11e-168(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61012546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.12e-70heat shock factor 4
Publications ? help Back to Top
  1. Scharf KD, et al.
    Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF.
    EMBO J., 1990. 9(13): p. 4495-501
    [PMID:2148291]