PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g026365m
Common NameCISIN_1g026365mg, LOC102609800
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family LBD
Protein Properties Length: 240aa    MW: 26258.9 Da    PI: 8.3604
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g026365mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260103.42e-322103197
             DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 
                        +C++C+vlr++C+++C+l+p++     p++q +++ +v+k+FG++ ++++++a+pe++r+++++sl+yeA+ r+ +Pv+Gavg+++++++++
  orange1.1g026365m   2 SCNGCRVLRKGCSESCILRPCLqwiesPESQGHATVFVAKFFGRAGLMSFISAVPESQRPALFQSLLYEACGRTVNPVNGAVGLLWTGNWHV 93 
                        6******************************************************************************************* PP

             DUF260  88 eqlkaelall 97 
                        +q+++e++l+
  orange1.1g026365m  94 CQAAVETVLR 103
                        ****998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.0621107IPR004883Lateral organ boundaries, LOB
PfamPF031952.0E-272101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSESCILR PCLQWIESPE SQGHATVFVA KFFGRAGLMS FISAVPESQR  60
PALFQSLLYE ACGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGTLRPV PELLNSCGGS  120
PTPTSDEVSE AEVTCTDMSR LQDRSFPSSH CRFSSSRSKV SPAKRKRVEE SAMKLQQSDL  180
DLRLTPRFTG KVPPEVRRRP GTPSMNSEES GTTTCFESGL TDHRYLNGAE ERKLLNLFV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.49090.0flower| vegetative meristem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM5967160.0HM596716.1 Citrus trifoliata clone Y2-H15 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006466482.11e-176LOB domain-containing protein 38
SwissprotQ9SN239e-97LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A067GGX21e-175A0A067GGX2_CITSI; Uncharacterized protein
STRINGXP_006466482.11e-176(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82128122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.11e-90LOB domain-containing protein 37