PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g026385m
Common NameCISIN_1g026385mg, LOC102626255
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 240aa    MW: 26909.2 Da    PI: 6.7941
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g026385mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.44.8e-2099149255
                AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr+++ +g+++AeIrdp   + k +r++lg+f ta eAaka+++a+ k++g
  orange1.1g026385m  99 HYRGVRRRP-WGKYAAEIRDP---NkKGTRVWLGTFNTAVEAAKAYDNAAFKMRG 149
                        7********.**********9...4345*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.6E-3398158IPR001471AP2/ERF domain
SMARTSM003801.3E-3799163IPR001471AP2/ERF domain
PROSITE profilePS5103224.38199157IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-2399159IPR016177DNA-binding domain
CDDcd000185.89E-3299157No hitNo description
PfamPF008477.2E-1499149IPR001471AP2/ERF domain
PRINTSPR003671.6E-10100111IPR001471AP2/ERF domain
PRINTSPR003671.6E-10123139IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MAAGHHHHQD HEALTLERIS QYLLNDLTPM DSYSFISNLP QQNPASTDEQ ILVQKTSSTL  60
SQRKPSSINV RIPPPTTSIF RLKDEDKDLE VADDYKERHY RGVRRRPWGK YAAEIRDPNK  120
KGTRVWLGTF NTAVEAAKAY DNAAFKMRGR KAILNFPLEI GEISLDSDEV QQVDCGKKRK  180
YEENEEFERK VAVKKEETVS GGVGLGPLTP SSWTGFWDDG NGIFSVPPLS PCFGQLGVC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-2998160163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A6e-2996160266ATERF1
3gcc_A6e-2996160266ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.57880.0callus| fruit| leaf| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00556DAPTransfer from AT5G51190Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006490015.10.0ethylene-responsive transcription factor ERF105
TrEMBLA0A067D6A51e-180A0A067D6A5_CITSI; Uncharacterized protein
STRINGXP_006490015.11e-180(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78932641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.13e-61ERF family protein