PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g026433m
Common NameCISIN_1g024771mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GATA
Protein Properties Length: 239aa    MW: 26344.2 Da    PI: 10.2765
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g026433mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.42.3e-19155189135
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                        C++Cg+ kTp+WR gp g+ktLCnaCG+++++ +l
  orange1.1g026433m 155 CQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRL 189
                        *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004018.5E-17149199IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.78152185IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.5E-15152212No hitNo description
Gene3DG3DSA:3.30.50.105.2E-15153187IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.11E-13154202No hitNo description
PROSITE patternPS003440155180IPR000679Zinc finger, GATA-type
PfamPF003206.4E-17155189IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MVQKTVLPFL KINSGRAFVE FNVQVSLFFL AVSHEECAEE ELEWLSNFPT VETFVDISSN  60
PNILKQQSPN SVLENSNSSS STSTNGSTIT NGNNNSNSII MNCCGNLRVP VRARSKLRTR  120
CRRELLNQEA WWGSVHGSVK AAKPVVSKVI IGRKCQHCGA EKTPQWRAGP MGPKTLCNAC  180
GVRFKSGRLV PEYRPANSPT FSSELHSNSH RKVVEMRRQK QMMGIELGVL GVKPVDKG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.24730.0flower
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in roots. Also expressed in stems, flowers and leaves. {ECO:0000269|PubMed:12139008}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00377DAPTransfer from AT3G24050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024038779.11e-174GATA transcription factor 1 isoform X2
SwissprotQ8LAU99e-53GATA1_ARATH; GATA transcription factor 1
TrEMBLA0A067DTZ71e-174A0A067DTZ7_CITSI; Uncharacterized protein
TrEMBLA0A2H5NQS11e-174A0A2H5NQS1_CITUN; Uncharacterized protein
STRINGXP_006492137.11e-147(Citrus sinensis)
STRINGXP_006420528.11e-147(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.11e-46GATA transcription factor 1