PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g026436m
Common NameCISIN_1g026436mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 239aa    MW: 26644.4 Da    PI: 8.8106
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g026436mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.89.7e-1458104455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         h ++Er+RR+++N++f  L  l+P +     kK +Ka+iL   ++Y+k+Lq
  orange1.1g026436m  58 DHVIAERKRREKLNQRFIALSALVPGL-----KKTDKASILGDSIKYLKQLQ 104
                        6999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.96754103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-1158104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.26E-1758119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-1858116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.52E-1359108No hitNo description
SMARTSM003531.8E-1560109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MTSSPAPTVA GSSFHGNINS SSSLISQGSY LDQFCSKKKV QEPRRVSSVI RDPSHAQDHV  60
IAERKRREKL NQRFIALSAL VPGLKKTDKA SILGDSIKYL KQLQERVKAL EEQTSKKTVE  120
SMIIVKKSQM IYTDDETSPT DINFDAQSNQ YLPEIEVRVS DRDVLIRIHC EKNNNKGHLA  180
NILSEIENVH HLSVLSCNVL PFGNSTVDIT VVAQMDVESD VTVKDLVKNL QPALRKFM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-1458107857Transcription factor MYC2
5gnj_B5e-1458107857Transcription factor MYC2
5gnj_E5e-1458107857Transcription factor MYC2
5gnj_F5e-1458107857Transcription factor MYC2
5gnj_G5e-1458107857Transcription factor MYC2
5gnj_I5e-1458107857Transcription factor MYC2
5gnj_M5e-1458107857Transcription factor MYC2
5gnj_N5e-1458107857Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16267ERKRRE
26368RKRREK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:12679534}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006426180.21e-173transcription factor bHLH25
SwissprotQ9T0721e-61BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A067GGN11e-174A0A067GGN1_CITSI; Uncharacterized protein
STRINGXP_006426180.11e-172(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.16e-64bHLH family protein