PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g026447m
Common NameCISIN_1g022072mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family G2-like
Protein Properties Length: 239aa    MW: 26067.5 Da    PI: 5.6438
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g026447mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like33.77.8e-111233355
            G2-like 33 lelmkvkgLtlehvkSHLQkYRl 55
                       +++m+vkgLtl h+kSHLQkYRl
  orange1.1g026447m  1 MRTMNVKGLTLFHLKSHLQKYRL 23
                       689*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.6E-10124IPR009057Homeodomain-like
PfamPF143792.5E-1664108IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MRTMNVKGLT LFHLKSHLQK YRLGKQSGRE MGDSPKDASY LIESSANDNS LPNFPASDMN  60
ESYEVKEALR VQMEVQSKLH LQVEAEKHLQ IRQNAQQRYL AMLERACKIL TDQILGGAVV  120
DADSEKCKGL GTKMPRSYIL DSLGFYTSQS VEVAEVQCPE ELLPNLHPQR ADCSTESCLT  180
SHESSGGLTM EGSPVGGKNS ILSLDTTTGS LIWGEVKMGA QEISLARENP SGISGYGI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.169270.0stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006467240.11e-175protein PHR1-LIKE 3-like
TrEMBLA0A067GIX71e-176A0A067GIX7_CITSI; Uncharacterized protein
STRINGXP_006467240.11e-174(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13640.11e-36G2-like family protein