PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g026474m
Common NameCISIN_1g0264741mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NF-YA
Protein Properties Length: 239aa    MW: 26524.8 Da    PI: 9.4134
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g026474mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.31.1e-32143199158
          CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                        +ep++VNaKQy++Il+RRq+Rak+e+e+k+  ksrkpylheSRh hAlrR+Rg+gGrF
  orange1.1g026474m 143 EEPVFVNAKQYHGILRRRQSRAKAESENKV-LKSRKPYLHESRHLHALRRARGCGGRF 199
                        69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.3E-36141202IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.605142202IPR001289Nuclear transcription factor Y subunit A
PfamPF020458.6E-28144199IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.5E-23145167IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860147167IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.5E-23176199IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MSLKLFATSL TSILLVVLPD LSCRFYMRDG LMTSSVHDMS DNSDADEQRK HPESQLQSST  60
PAMGMSHPSI TTPNVQYATH QVGAGHAMAP AAYPYPDPYY RSIFAPYDAQ PYPPQPYGGQ  120
PMVHLQLMGI QQAGVPLPTD AVEEPVFVNA KQYHGILRRR QSRAKAESEN KVLKSRKPYL  180
HESRHLHALR RARGCGGRFL NSKKNENQQK GMASDDKSQS NLNLNSDKNE IASSDRQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-21142207166NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.23050.0callus| flower| fruit
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4721772e-53AM472177.2 Vitis vinifera contig VV78X243821.10, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006468305.11e-163nuclear transcription factor Y subunit A-7 isoform X1
SwissprotQ84JP17e-74NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBLA0A067GIX81e-177A0A067GIX8_CITSI; Uncharacterized protein
STRINGXP_006468304.11e-178(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41682756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.21e-57nuclear factor Y, subunit A7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]