PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g026704m

Common Name

CISIN_1g026704mg, LOC102622870

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

FAR1

Protein Properties

Length: 235aa MW: 26213.5 Da PI: 7.9214

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g026704m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	86.4	4.4e-27	118	207	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fYn+Y+ ++GF +r+++ ++skr+g+i+++ +vC+keg+r++ +++ ++k+ r r+ tr+gCka++ v+k++ gkw+vtk+++eH+H+l+ orange1.1g026704m 118 FYNAYGMRLGFITRINYRTRSKRDGSIISQSLVCNKEGYRKPPSSRhEVKSIRLRPPTRVGCKAMISVRKMSFGKWVVTKFVKEHTHALS 207 **************************************99887747788899********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.5E-25	118	207	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MDSRHGMGIQ LKQNDKDAQD KVSDDANDNE QEDSVLYSEI QLEQNSYEII GGTHFITTDN 60 EAHLGNEGMA IGSSVEMVSQ VEKNDKMTHS SGVQLNTVCG DEPYVGQEFE SVAAAHAFYN 120 AYGMRLGFIT RINYRTRSKR DGSIISQSLV CNKEGYRKPP SSRHEVKSIR LRPPTRVGCK 180 AMISVRKMSF GKWVVTKFVK EHTHALSTTQ GQTTVLYRQI VVNSCPYPSR LVCI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	134	139	RTRSKR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006480508.1	1e-177	protein FAR1-RELATED SEQUENCE 12 isoform X1
Refseq	XP_006480509.1	1e-178	protein FAR1-RELATED SEQUENCE 12 isoform X2
TrEMBL	A0A067E3A0	1e-176	A0A067E3A0_CITSI; Uncharacterized protein
STRING	XP_006480508.1	1e-177	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM22968	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	3e-45	FAR1 family protein

Link Out ? help Back to Top
Phytozome	orange1.1g026704m
Entrez Gene	102622870