PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g026761m
Common NameCISIN_1g015261mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 234aa    MW: 26151.2 Da    PI: 4.7071
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g026761mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.1e-056791123
                       EEETTTTEEESSHHHHHHHHHH..T CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirt..H 23
                       y+C+ Cgk ++++  L +H+++  H
  orange1.1g026761m 67 YSCGLCGKGYRSSKALAQHLNSrsH 91
                       99******************98666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004510.0099135IPR003604Zinc finger, U1-type
SuperFamilySSF576675.82E-6336No hitNo description
SMARTSM0035545428IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280628IPR007087Zinc finger, C2H2
SuperFamilySSF576673.85E-66798No hitNo description
Gene3DG3DSA:3.30.160.603.8E-46794IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.8686796IPR007087Zinc finger, C2H2
SMARTSM003550.126791IPR015880Zinc finger, C2H2-like
SMARTSM00451246798IPR003604Zinc finger, U1-type
PfamPF121714.9E-56791IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002806991IPR007087Zinc finger, C2H2
SuperFamilySSF576673.97E-8170230No hitNo description
PfamPF127561.6E-9185230IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MPGLTCNSCN REFNDDAEQK LHYKSDWHRY NLKRKVAGVP GVTEALFLAR QAALAQEKNK  60
NATPMTYSCG LCGKGYRSSK ALAQHLNSRS HIMRASQGTS NEEKEKVIIK PIPLRDVNKP  120
PRKREANNEE SEDSDDEWEE VGPDEVLVSE ATNSLTNLNV GSPADDDLEE DDDDGAFEEF  180
DPACCFMCDL PHDAIENCMV HMHKCHGFFI PDVEYLKDPK GLLTYLGLKV PSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6qik_z3e-1242266229Cytoplasmic 60S subunit biogenesis factor REH1
6qt0_z3e-1242266229Cytoplasmic 60S subunit biogenesis factor REH1
6qtz_z3e-1242266229Cytoplasmic 60S subunit biogenesis factor REH1
6ri5_z3e-1242266229Cytoplasmic 60S subunit biogenesis factor REH1
6s05_z3e-1242266229Cytoplasmic 60S subunit biogenesis factor REH1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPre-60S-associated factor involved in the cytoplasmic maturation of the 60S subunit. Involved in the dissociation and recycling of other late pre-60S factors before newly synthesized large ribosomal subunits enter translation (By similarity). Can complement the growth defect of a yeast mutant lacking REI1 (PubMed:24038679). Required for leaf growth under cold temperature conditions (PubMed:24038679). {ECO:0000250|UniProtKB:P38344, ECO:0000269|PubMed:24038679}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006450152.11e-172cytoplasmic 60S subunit biogenesis factor REI1 homolog 1
RefseqXP_006483574.11e-172cytoplasmic 60S subunit biogenesis factor REI1 homolog 1
SwissprotQ8H1G59e-94REIL1_ARATH; Cytoplasmic 60S subunit biogenesis factor REI1 homolog 1
TrEMBLA0A067FIQ11e-174A0A067FIQ1_CITSI; Uncharacterized protein
STRINGXP_006483574.11e-172(Citrus sinensis)
STRINGXP_006450152.11e-172(Citrus clementina)
Publications ? help Back to Top
  1. Schmidt S,Dethloff F,Beine-Golovchuk O,Kopka J
    The REIL1 and REIL2 proteins of Arabidopsis thaliana are required for leaf growth in the cold.
    Plant Physiol., 2013. 163(4): p. 1623-39
    [PMID:24038679]
  2. Beine-Golovchuk O, et al.
    Plant Temperature Acclimation and Growth Rely on Cytosolic Ribosome Biogenesis Factor Homologs.
    Plant Physiol., 2018. 176(3): p. 2251-2276
    [PMID:29382692]