PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g026836m
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 233aa    MW: 27075.4 Da    PI: 10.7326
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g026836mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.52e-077090526
                       --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                        Cr f+r G+C +Gd CkF+H 
  orange1.1g026836m 70 VCRAFQR-GECTRGDGCKFSHN 90
                       6******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.8596592IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-66790IPR000571Zinc finger, CCCH-type
SMARTSM003566.8E-46791IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-57090IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-57092IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016607Cellular Componentnuclear speck
GO:0000166Molecular Functionnucleotide binding
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MPSTKIRLTF TSAASLSISL KAIFSRFLPN NLNGAQILGR TIRVDHVAKY KKKEEEDEET  60
RQRMREERGV CRAFQRGECT RGDGCKFSHN EQRAANTGGG PQDRSSRWGH EKFEGFSWGK  120
NDSSSRATGS GRVALEGNPN QSDRREEKRS IRHDHREKPR EDHGRREDKR SRRHSDNNEF  180
EARSREDHYR RDEKRPKRHE SESYLREDQD RRGGDKSSTG RGDSSSHRHR ER*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.109040.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024035431.11e-142zinc finger CCCH domain-containing protein 42 isoform X2
TrEMBLA0A2H5NDW71e-140A0A2H5NDW7_CITUN; Uncharacterized protein (Fragment)
TrEMBLV4SCP31e-140V4SCP3_9ROSI; Uncharacterized protein
STRINGXP_006425052.11e-141(Citrus clementina)