PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g026943m
Common NameCISIN_1g026943mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 231aa    MW: 25735.5 Da    PI: 10.29
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g026943mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.48.2e-165399455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                        hn+ ErrRRdriN+++  L++l+P+a      K +Ka++L ++++Y+k+L+
  orange1.1g026943m 53 VHNQSERRRRDRINQKMKALQKLVPNA-----SKTDKASMLDEVIDYLKQLK 99
                       5*************************9.....7*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.14E-1645103No hitNo description
SuperFamilySSF474594.58E-1946118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.6E-1946119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.6694998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-135398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-1755104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MMTWASYESL KSLKTKTTDE DSASHGRSEN QDEDHETKTG RSHSSKRRRT AAVHNQSERR  60
RRDRINQKMK ALQKLVPNAS KTDKASMLDE VIDYLKQLKA QVQMMNNVRN NMPQMNMMMP  120
LGMQQQLQMS LLARMGMGVG LGTGMGMLDM NTMAAAAATA RTAPQSLPPP IYSPAASVTL  180
PDPYYAFLAQ SMNVELYNKM AALFRQQVKQ NTIQQAACSP SMQSNHMQGD *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14661RRRTAAVHNQSERRRR
25762ERRRRD
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in stems and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtRequired during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006440685.11e-168transcription factor PIF7
SwissprotQ8GZ385e-35UNE10_ARATH; Transcription factor UNE10
TrEMBLA0A067EKY21e-170A0A067EKY2_CITSI; Uncharacterized protein
STRINGXP_006440685.11e-167(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39192451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.18e-31bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]