PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g027188m
Common NameCISIN_1g022221mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 228aa    MW: 23996.1 Da    PI: 9.1456
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g027188mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.26e-083459227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                       k +lC+ +     Ck+Gd+C+FaHg+
  orange1.1g027188m 34 KSRLCNKYNSAEGCKFGDKCHFAHGE 59
                       6799******99************96 PP
2zf-CCCH37.54e-12194218126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        +kt+lC +fa+ G C +GdrC+FaHg
  orange1.1g027188m 194 FKTKLCENFAK-GSCTFGDRCHFAHG 218
                        69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.6E-133063IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-83163IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.1123260IPR000571Zinc finger, CCCH-type
SMARTSM003560.0253459IPR000571Zinc finger, CCCH-type
PfamPF006428.7E-63459IPR000571Zinc finger, CCCH-type
SuperFamilySSF547919.06E-1597174IPR004088K Homology domain, type 1
SMARTSM003229.4E-13103173IPR004087K Homology domain
PROSITE profilePS5008413.9104168IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.108.1E-16104172IPR004088K Homology domain, type 1
PfamPF000131.1E-11106170IPR004088K Homology domain, type 1
CDDcd001057.41E-14108168No hitNo description
Gene3DG3DSA:4.10.1000.101.1E-16190224IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7193219IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.084193220IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-9193223IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-9194218IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MLNLGGTPAH PPPPPRNSGA PPSFPDGSSP PAVKSRLCNK YNSAEGCKFG DKCHFAHGEW  60
ELGRPTVPSY EDPRAMGGPM HGRMGGRLEP PPQSLGAAAS FGASATAKIS IDAKLAGAII  120
GKNGVNSKQI CRLTGAKLSI RDHEVDPNLR NIELEGTFDQ IKQASAMVRE LIVNVGSGSG  180
HSMKSNSSSQ SNNFKTKLCE NFAKGSCTFG DRCHFAHGSE ELRKSVI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.15440.0flower| fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006445923.11e-166zinc finger CCCH domain-containing protein 14
RefseqXP_006492659.11e-166zinc finger CCCH domain-containing protein 14
SwissprotQ7F8R03e-84C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A067EYY61e-166A0A067EYY6_CITSI; Uncharacterized protein
STRINGXP_006492659.11e-165(Citrus sinensis)
STRINGXP_006445923.11e-165(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.17e-50C3H family protein