PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g027250m

Common Name

CISIN_1g026809mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

WOX

Protein Properties

Length: 227aa MW: 26020.5 Da PI: 7.0313

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g027250m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.2	1.7e-19	93	153	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le ++ + + +p ++++++++++l +++e++V++WFqNrRa+ k+ orange1.1g027250m 93 RQRWTPTPAQLQILEHVYDEcKGTPRKQKIQDMTAELakhgQISETNVYNWFQNRRARLKR 153 89***************9889*********************************997 PP
2	Wus_type_Homeobox	93.2	2.4e-30	92	155	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPtp Q++iLe++y++ tP k++iq++taeL+++G+i+++NV++WFQNr+aR ++kq orange1.1g027250m 92 ARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQ 155 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.2E-15	86	156	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.59E-16	88	155	IPR009057	Homeodomain-like
PROSITE profile	PS50071	13.475	89	154	IPR001356	Homeobox domain
SMART	SM00389	4.6E-12	91	158	IPR001356	Homeobox domain
Pfam	PF00046	2.6E-17	93	153	IPR001356	Homeobox domain
CDD	cd00086	5.97E-12	93	155	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MKMEWPNFQQ GGEMERQFQQ DGGDTSNGLC VKVMTDEQME LLRKQIAVYA MICEQLVQMH 60 KVFSAQNEIA GMRMGNPYFD PFVASGSQKL TARQRWTPTP AQLQILEHVY DECKGTPRKQ 120 KIQDMTAELA KHGQISETNV YNWFQNRRAR LKRKQSGVVP NNAESEAETV THAESRKQNP 180 ESIQSLEDSA PPPRDEDIYP QSPDLGNKFF CFNVLLNKYK LIFSHM*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	146	154	RRARLKRKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Csi.2328	0.0	flower\| fruit

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006435385.1	1e-154	WUSCHEL-related homeobox 13
Refseq	XP_006473808.1	1e-154	WUSCHEL-related homeobox 13
Swissprot	Q5QMM3	6e-64	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A067HBM2	1e-171	A0A067HBM2_CITSI; Uncharacterized protein
STRING	XP_006473808.1	1e-154	(Citrus sinensis)
STRING	XP_006435385.1	1e-154	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	4e-65	WUSCHEL related homeobox 13

Link Out ? help Back to Top
Phytozome	orange1.1g027250m

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]