PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g027307m

Common Name

CISIN_1g027307mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

LBD

Protein Properties

Length: 226aa MW: 24581.9 Da PI: 8.8553

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g027307m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	135.7	1.7e-42	42	142	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l+++pe++r da++slvyeA++r+rdPvyG++g i++lqqq+++l+a orange1.1g027307m 42 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLNDVPESQRADAANSLVYEANVRLRDPVYGCMGAISTLQQQVQCLQA 133 7***************************************************************************************** PP DUF260 93 elallkeel 101 el+++++e+ orange1.1g027307m 134 ELNVVRNEI 142 **99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.03	41	142	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.3E-42	42	139	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MSRERERFDE IGKKIKREAD ASSHMGRRHM LGPPGTLNTI TPCAACKLLR RRCAQECPFS 60 PYFSPHEPQK FASVHKVFGA SNVSKMLNDV PESQRADAAN SLVYEANVRL RDPVYGCMGA 120 ISTLQQQVQC LQAELNVVRN EIIKYKYREA SNVMPSSHHP HQVALLSSGA VTVAAAPSPS 180 LHTPQPPPPP LPSTPSCSSS MYAQPITSAA DYSTISGNQN VSYFG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-45	34	153	3	122	LOB family transfactor Ramosa2.1
5ly0_B	2e-45	34	153	3	122	LOB family transfactor Ramosa2.1
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006435864.1	1e-145	LOB domain-containing protein 15
Refseq	XP_006486213.1	1e-145	LOB domain-containing protein 15
Swissprot	Q8L5T5	1e-87	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	A0A067DN37	1e-166	A0A067DN37_CITSI; Uncharacterized protein
STRING	XP_006486213.1	1e-145	(Citrus sinensis)
STRING	XP_006435864.1	1e-145	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1927	27	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	5e-88	LOB domain-containing protein 15

Link Out ? help Back to Top
Phytozome	orange1.1g027307m

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]